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Table 3 Y. pseudotuberculosis IP32953 pYV plasmid-harbored genes that are transcriptionally regulated by growth medium and/or temperature.

From: Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression

    Fold ratio in gene transcription (p-value)
Gene designation Genoscript spot ID Gene product/function Human plasma/Luria Bertani Broth 37°C/28°C
pYV0013 pCD1-yadA hypothetical protein 13.528 (< 0.001) 1.577 (0.046)
pYV0014 pCD1-AAC62595 possible transposase remnant 1.789 (0.025) 1.884 (0.016)
pYV0017 pCD1-tnpR putative resolvase 0.341 (< 0.001)   
pYV0020 pCD1-sycH putative YopH targeting protein 5.088 (< 0.001) 2.715 (< 0.001)
pYV0024 pCD1-sycE putative YopE chaperone 5.781 (< 0.001) 2.403 (0.005)
pYV0040 pCD1-yopK/yopQ Yop targeting protein YopK, YopQ    1.666 (0.019)
pYV0047 pCD1-yopM putative targeted effector protein 3.468 (< 0.001) 2.252 (0.002)
pYV0054 pCD1-yopD putative Yop negative regulation/targeting component 2.933 (< 0.001) 2.211 (0.004)
pYV0055 pCD1-yopB putative Yop targeting protein 2.816 (< 0.001) 2.196 (< 0.001)
pYV0056 pCD1-lcrH low calcium response protein H 3.522 (< 0.001) 1.851 (0.021)
pYV0057 pCD1-lcrV putative V antigen, antihost protein/regulator 1.904 (< 0.001) 1.637 (0.003)
pYV0058 pCD1-lcrG putative Yop regulator 1.713 (0.014)   
pYV0059 pCD1-lcrR hypothetical protein LcrR 1.469 (0.001) 1.849 (< 0.001)
pYV0062 pCD1-yscX putative type III secretion protein 1.629 (0.009) 1.533 (0.020)
pYV0065 pCD1-yopN putative membrane-bound Yop targeting protein 2.612 (< 0.001) 1.549 (0.049)
pYV0067 pCD1-yscN putative Yops secretion ATP synthase 2.856 (< 0.001) 1.717 (0.002)
pYV0068 pCD1-yscO putative type III secretion protein 3.088 (< 0.001)   
pYV0069 pCD1-yscP putative type III secretion protein    1.593 (0.018)
pYV0070 pCD1-yscQ putative type III secretion protein 1.635 (0.026)   
pYV0071 pCD1-yscR putative Yop secretion membrane protein 1.949 (0.012)   
pYV0072 pCD1-yscS putative type III secretion protein 2.331 (< 0.001) 1.897 (0.002)
pYV0075 pCD1-virG putative Yop targeting lipoprotein 1.957    
pYV0076 pCD1-lcrF/virF putative thermoregulatory protein 1.441 (0.042)   
pYV0078 pCD1-yscB hypothetical protein 3.038 (0.002)   
pYV0079 pCD1-yscC putative type III secretion protein 2.384 (0.001) 2.713 (< 0.001)
pYV0080 pCD1-yscD putative type III secretion protein 2.542 (< 0.001) 1.990 (0.005)
pYV0081 pCD1-yscE putative type III secretion protein 2.711 (0.001) 1.809 (0.032)
pYV0082 pCD1-yscF putative type III secretion protein 2.117 (0.017)   
pYV0083 pCD1-yscG putative type III secretion protein 2.463 (< 0.001)   
pYV0085 pCD1-yscI putative type III secretion protein 1.864 (0.003)   
pYV0089 pCD1-yscM putative type III secretion regulatory protein 0.679 (0.036)