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Table 3 Y. pseudotuberculosis IP32953 pYV plasmid-harbored genes that are transcriptionally regulated by growth medium and/or temperature.

From: Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression

   

Fold ratio in gene transcription (p-value)

Gene designation

Genoscript spot ID

Gene product/function

Human plasma/Luria Bertani Broth

37°C/28°C

pYV0013

pCD1-yadA

hypothetical protein

13.528

(< 0.001)

1.577

(0.046)

pYV0014

pCD1-AAC62595

possible transposase remnant

1.789

(0.025)

1.884

(0.016)

pYV0017

pCD1-tnpR

putative resolvase

0.341

(< 0.001)

  

pYV0020

pCD1-sycH

putative YopH targeting protein

5.088

(< 0.001)

2.715

(< 0.001)

pYV0024

pCD1-sycE

putative YopE chaperone

5.781

(< 0.001)

2.403

(0.005)

pYV0040

pCD1-yopK/yopQ

Yop targeting protein YopK, YopQ

  

1.666

(0.019)

pYV0047

pCD1-yopM

putative targeted effector protein

3.468

(< 0.001)

2.252

(0.002)

pYV0054

pCD1-yopD

putative Yop negative regulation/targeting component

2.933

(< 0.001)

2.211

(0.004)

pYV0055

pCD1-yopB

putative Yop targeting protein

2.816

(< 0.001)

2.196

(< 0.001)

pYV0056

pCD1-lcrH

low calcium response protein H

3.522

(< 0.001)

1.851

(0.021)

pYV0057

pCD1-lcrV

putative V antigen, antihost protein/regulator

1.904

(< 0.001)

1.637

(0.003)

pYV0058

pCD1-lcrG

putative Yop regulator

1.713

(0.014)

  

pYV0059

pCD1-lcrR

hypothetical protein LcrR

1.469

(0.001)

1.849

(< 0.001)

pYV0062

pCD1-yscX

putative type III secretion protein

1.629

(0.009)

1.533

(0.020)

pYV0065

pCD1-yopN

putative membrane-bound Yop targeting protein

2.612

(< 0.001)

1.549

(0.049)

pYV0067

pCD1-yscN

putative Yops secretion ATP synthase

2.856

(< 0.001)

1.717

(0.002)

pYV0068

pCD1-yscO

putative type III secretion protein

3.088

(< 0.001)

  

pYV0069

pCD1-yscP

putative type III secretion protein

  

1.593

(0.018)

pYV0070

pCD1-yscQ

putative type III secretion protein

1.635

(0.026)

  

pYV0071

pCD1-yscR

putative Yop secretion membrane protein

1.949

(0.012)

  

pYV0072

pCD1-yscS

putative type III secretion protein

2.331

(< 0.001)

1.897

(0.002)

pYV0075

pCD1-virG

putative Yop targeting lipoprotein

1.957

   

pYV0076

pCD1-lcrF/virF

putative thermoregulatory protein

1.441

(0.042)

  

pYV0078

pCD1-yscB

hypothetical protein

3.038

(0.002)

  

pYV0079

pCD1-yscC

putative type III secretion protein

2.384

(0.001)

2.713

(< 0.001)

pYV0080

pCD1-yscD

putative type III secretion protein

2.542

(< 0.001)

1.990

(0.005)

pYV0081

pCD1-yscE

putative type III secretion protein

2.711

(0.001)

1.809

(0.032)

pYV0082

pCD1-yscF

putative type III secretion protein

2.117

(0.017)

  

pYV0083

pCD1-yscG

putative type III secretion protein

2.463

(< 0.001)

  

pYV0085

pCD1-yscI

putative type III secretion protein

1.864

(0.003)

  

pYV0089

pCD1-yscM

putative type III secretion regulatory protein

0.679

(0.036)