COG class | Gene designation | Genoscript spot ID | Gene product/function | Fold ratio in gene transcription (p-value) | |||
---|---|---|---|---|---|---|---|
Human plasma/Luria Bertani Broth | 37°C/28°C | ||||||
C: energy production and conversion | |||||||
YPTB0086 (glpK) | YPO0090 | glycerol kinase | 0.437 | (0.002) | |||
YPTB0108 (ppc) | YPO3929 | phosphoenolpyruvate carboxylase | 0.678 | (0.045) | |||
YPTB0118 | YPO3917 | putative pyridine nucleotide-disulphide oxidoreductase | 1.559 | (0.016) | |||
YPTB0211 (glpC) | YPO3824 | anaerobic glycerol-3-phosphate dehydrogenase subunit C | 0.49 | (0.003) | |||
YPTB0374 (qor) | YPO0319 | quinone oxidoreductase | 1.393 | (0.04) | |||
YPTB0410 (frdD) | YPO0357 | fumarate reductase hydrophobic protein | 0.393 | (0.001) | |||
YPTB0411 (frdC) | YPO0358 | fumarate reductase hydrophobic protein | 0.248 | (< 0.001) | |||
YPTB0412 (frdB) | YPO0359 | fumarate reductase iron-sulfur protein | 0.128 | (< 0.001) | |||
YPTB0413 (frdA) | YPO0360 | fumarate reductase flavoprotein subunit | 0.157 | (< 0.001) | |||
YPTB0460 (mdh) | YPO3516 | malate dehydrogenase | 0.665 | (0.01) | 0.543 | (< 0.001) | |
YPTB0714 (aceF) | YPO3418 | pyruvate dehydrogenase. dihydrolipoyltransacetylase component | 0.676 | (0.03) | |||
YPTB0715 (lpdA) | YPO3417 | dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex | 0.657 | (0.01) | |||
YPTB0716 (acnB) | YPO3415 | aconitate hydratase 2 | 0.51 | (< 0.001) | 0.492 | (< 0.001) | |
YPTB0796 (fumA) | YPO3335 | fumarate hydratase. class I | 0.351 | (< 0.001) | 1.518 | (0.049) | |
YPTB0887 (nqrA) | YPO3240 | NADH-ubiquinone oxidoreductase subunit A | 0.328 | (< 0.001) | |||
YPTB0888 (nqrB) | YPO3239 | NADH-ubiquinone oxidoreductase subunit B | 0.58 | (0.002) | |||
YPTB0889 (nqrC) | YPO3238 | Na+-translocating NADH-quinone reductase subunit c | 0.551 | (0.021) | |||
YPTB0892 (nqrF) | YPO3235 | NADH-uniquinone oxidoreductase subunit F | 0.661 | (0.044) | |||
YPTB0895 | YPO3232 | putative exported protein | 0.6 | (0.008) | |||
YPTB0949 (cyoD) | YPO3167 | cytochrome O ubiquinol oxidase subunit CyoD | 0.534 | (0.001) | |||
YPTB0952 (cyoA) | YPO3164 | cytochrome O ubiquinol oxidase subunit II | 0.537 | (< 0.001) | 0.516 | (< 0.001) | |
YPTB1125 (fldA) | YPO2635 | flavodoxin 1 | 0.722 | (0.033) | |||
YPTB1143 (sdhC) | YPO1109 | succinate dehydrogenase cytochrome b-556 subunit | 0.552 | (0.015) | 0.622 | (0.045) | |
YPTB1144 (sdhD) | YPO1110 | succinate dehydrogenase hydrophobic membrane anchor protein | 0.5 | (< 0.001) | 0.654 | (0.014) | |
YPTB1145 (sdhA) | YPO1111 | succinate dehydrogenase flavoprotein subunit | 0.497 | (< 0.001) | |||
YPTB1146 (sdhB) | YPO1112 | succinate dehydrogenase iron-sulfur protein | 0.592 | (0.003) | |||
YPTB1147 (sucA) | YPO1113 | 2-oxoglutarate dehydrogenase E1 component | 0.515 | (0.006) | |||
YPTB1148 (sucB) | YPO1114 | dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydro | 0.61 | (0.013) | 0.671 | (0.04) | |
YPTB1149 (sucC) | YPO1115 | succinyl-CoA synthetase beta chain | 0.419 | (< 0.001) | |||
YPTB1150 (sucD) | YPO1116 | succinyl-CoA synthetase alpha chain | 0.524 | (< 0.001) | |||
YPTB1151 (cydA) | YPO1117 | cytochrome D ubiquinol oxidase subunit I | 0.442 | (< 0.001) | |||
YPTB1152 (cydB) | YPO1118 | cytochrome D ubiquinol oxidase subunit II | 0.565 | (0.004) | |||
YPTB1408 (pflB) | YPO1383 | formate acetyltransferase 1 | 0.462 | (< 0.001) | 1.911 | (< 0.001) | |
YPTB1723 (putA) | YPO1851 | bifunctional PutA protein [includes: proline dehydrogenase and delta-1-p | 0.643 | (< 0.001) | 0.642 | (< 0.001) | |
YPTB1945 | YPO1947 | putative thioredoxin | 1.646 | (0.002) | |||
YPTB2012 | YPO2028 | putative exported protein | 0.6 | (0.008) | |||
YPTB2017 | YPO2035 | hypothetical protein | 1.694 | (0.045) | |||
YPTB2089 | YPO2163 | putative nitroreductase | 2.095 | (< 0.001) | |||
YPTB2103 (adhE) | YPO2180 | aldehyde-alcohol dehydrogenase | 2.115 | (< 0.001) | |||
YPTB2165 | YPO2244 | Fe-S binding NADH dehydrog. (pseudogene. F/S) | 2.157 | (< 0.001) | |||
YPTB2224 (pntB) | YPO2302 | NAD(P) transhydrogenase subunit beta | 1.502 | (0.037) | |||
YPTB2248 (ldhA) | YPO2329 | D-lactate dehydrogenase | 0.615 | (0.006) | |||
YPTB2253 (nifJ) | YPO2334 | putative pyruvate-flavodoxin oxidoreductase | 1.697 | (0.014) | |||
YPTB2427 (icdA) | YPO1641 | isocitrate dehydrogenase [NADP] | 0.632 | (0.013) | |||
YPTB2529 | YPO2492 | putative dioxygenase beta subunit | 0.535 | (0.02) | |||
YPTB2578 (nuoK) | or3622 | NADH dehydrogenase i chain k | 0.642 | (0.001) | |||
YPTB2581 (nuoH) | YPO2549 | NADH dehydrogenase I chain H | 0.745 | (0.023) | |||
YPTB2585 (nuoD) | YPO2553 | NADH dehydrogenase I chain C/D | 0.573 | (0.003) | |||
YPTB2587 (nuoA) | YPO2555 | NADH dehydrogenase I chain A | 0.62 | (< 0.001) | |||
YPTB2597 (ackA) | YPO2566 | acetate kinase | 0.652 | (0.001) | |||
YPTB2598 (pta) | YPO2567 | phosphate acetyltransferase | 0.667 | (0.017) | |||
YPTB2689 (dmsB) | YPO2966 | putative dimethyl sulfoxide reductase chain B protein | 0.598 | (0.031) | |||
YPTB2703 | YPO2980 | putative ion channel protein | 0.565 | (0.01) | |||
YPTB2758 (napC) | YPO3036 | cytochrome C-type protein NapC | 0.636 | (0.015) | |||
YPTB3469 (fadH) | YPO0589 | 2.4-dienoyl-CoA reductase | 0.465 | (0.002) | 1.713 | (0.024) | |
YPTB3539 | YPO3694 | putative cytochrome | 0.544 | (< 0.001) | |||
YPTB3592 | YPO3637 | putative carbohydrate kinase | 1.585 | (0.031) | |||
YPTB3656 (aceA) | YPO3725 | isocitrate lyase | 2.069 | (0.002) | 1.963 | (0.004) | |
YPTB3762 (pckA) | YPO0138 | phosphoenolpyruvate carboxykinase [ATP] | 0.395 | (0.001) | |||
YPTB3782 (glpD) | YPO3937 | aerobic glycerol-3-phosphate dehydrogenase | 0.409 | (0.02) | |||
YPTB3927 (fdoG) | or2536 | formate dehydrogenase-O. major subunit | 0.208 | (< 0.001) | 0.712 | (0.029) | |
YPTB3928 (fdoH) | YPO4057 | formate dehydrogenase-O. iron-sulfur subunit | 0.187 | (< 0.001) | 0.698 | (0.03) | |
YPTB3929 (fdoI) | YPO4056 | formate dehydrogenase. cytochrome b556 protein | 0.372 | (< 0.001) | 0.551 | (< 0.001) | |
YPTB3967 (atpD) | YPO4121 | ATP synthase beta subunit protein | 0.679 | (0.025) | |||
YPTB3968 (atpG) | YPO4122 | ATP synthase gamma subunit protein | 0.658 | (0.011) | |||
YPTB3970 (atpH) | or2565 | ATP synthase delta subunit protein | 0.7 | (0.005) | |||
YPTB3971 (atpF) | YPO4125 | ATP synthase subunit B protein | 0.616 | (0.002) | |||
YPTB3972 (atpE) | or2563 | ATP synthase subunit C protein | 0.656 | (0.037) | |||
YPTB3973 (atpB) | YPO4127 | ATP synthase subunit B protein | 0.667 | (0.004) | 0.732 | (0.021) | |
D: cell division and chromosome partitioning | |||||||
YPTB0222 (ftsE) | YPO3813 | cell division ATP-binding protein | 0.595 | (0.019) | |||
YPTB1430 (mukB) | YPO1405 | cell division protein | 0.62 | (0.006) | |||
YPTB2923 | YPO2686 | putative membrane protein | 0.358 | (< 0.001) | |||
YPTB3126 | or3195 | possible bacteriophage protein | 1.616 | (0.029) | |||
YPTB3976 (gidA) | YPO4130 | glucose inhibited division protein A | 0.607 | (0.007) | (0.007) | ||
E: amino acid transport and metabolism | |||||||
YPTB0003 (asnA) | YPO0003 | aspartate-ammonia ligase | 1.531 | (0.042) | |||
YPTB0024 (glnA) | YPO0024 | glutamine synthetase | 0.49 | (< 0.001) | 0.448 | (< 0.001) | |
YPTB0057 (tdh) | YPO0060 | threonine 3-dehydrogenase | 0.663 | (0.041) | |||
YPTB0066 (cysE) | YPO0070 | serine acetyltransferase | 1.669 | (0.016) | |||
YPTB0106 (metL) | YPO0116 | bifunctional aspartokinase/homoserine dehydrogenase II | 1.565 | (0.045) | |||
YPTB0111 (argB) | YPO3925 | acetylglutamate kinase | 1.495 | (0.016) | |||
YPTB0112 (argH) | YPO3924 | putative argininosuccinate lyase | 1.779 | (0.007) | |||
YPTB0134 (ilvG) | YPO3901 | acetolactate synthase isozyme II large subunit | 0.627 | (0.039) | |||
YPTB0203 (rhtC) | YPO3832 | threonine efflux protein | 0.597 | (0.024) | |||
YPTB0210 (glpB) | YPO3825 | putative anaerobic glycerol-3-phosphate dehydrogenase subunit B | 0.554 | (0.01) | |||
YPTB0226 (livK) | YPO3808 | branched-chain amino acid-binding protein | 1.49 | (0.032) | |||
YPTB0245 | or0170 | conserved hypothetical protein | 0.662 | (0.031) | |||
YPTB0248 (metE) | YPO3788 | 5-methyltetrahydropteroyltriglutamate – homocystei ne methyltransferase | 2.813 | (0.001) | |||
YPTB0345 | YPO0287 | putative methylenetetrahydrofolate reductase | 2.947 | (< 0.001) | |||
YPTB0402 (aspA) | YPO0348 | aspartate ammonia-lyase | 0.224 | (< 0.001) | |||
YPTB0407 | YPO0353 | conserved hypothetical protein | 0.687 | (0.03) | |||
YPTB0521 | YPO3452 | putative ABC transporter transporter. ATP-binding protein | 1.679 | (0.029) | |||
YPTB0524 | YPO3448 | (7G) putative extracellular solute-binding protein (pseudogene. F/S) | 1.553 | (0.046) | |||
YPTB0557 | or0391 | possible conserved cysteine desulfurase | (< 0.001) | ||||
PTB0602 (arcA) | YPO0459 | aerobic respiration control protein | 0.465 | (0.001) | |||
YPTB0604 (thrB) | YPO0461 | homoserine kinase | 1.411 | (0.03) | |||
YPTB0623 (carA) | YPO0481 | carbamoyl-phosphate synthase small chain | 0.609 | (< 0.001) | 0.747 | (0.028) | |
YPTB0624 (carB) | YPO0482 | carbamoyl-phosphate synthase large chain | 0.621 | (0.022) | 0.546 | (0.005) | |
YPTB0676 (ilvH) | YPO0540 | acetolactate synthase isozyme III small subunit | 1.68 | (0.006) | |||
YPTB0711 (aroP) | YPO3421 | aromatic amino acid transport protein | 1.68 | (0.006) | |||
YPTB0761 (cysH) | YPO3370 | phosphoadenosine phosphosulfate reductase (pseudogene. F/S) | 1.593 | (0.002) | |||
YPTB0789 | YPO3343 | probable extracellular solute-binding protein | 0.462 | (0.001) | |||
YPTB0911 (aroL) | YPO3215 | shikimate kinase II | 0.601 | (0.03) | |||
YPTB0920 (brnQ) | YPO3202 | branched-chain amino acid transport system II carrier protein | 1.481 | (0.033) | |||
YPTB1108 (glnH) | YPO2615 | putative amino acid-binding protein precursoR | 0.564 | (0.005) | |||
YPTB1186 | YPO1155 | putative amino acid transporteR | 1.736 | (0.017) | |||
YPTB1240 | YPO1200 | putative amino acid permease | 0.637 | (0.025) | |||
YPTB1241 | YPO1201 | putative amino acid decarboxylase | 0.557 | (0.024) | |||
YPTB1346 | YPO1315 | putative hydrolase (pseudogene. stop) | 1.578 | (< 0.001) | 0.669 | (0.001) | |
YPTB1352 (sdaC) | YPO1321 | serine transporteR | 0.526 | (0.028) | |||
YPTB1362 (potG) | YPO1332 | putrescine transport ATP-binding protein | 0.728 | (0.035) | |||
YPTB1375 (artM) | YPO1349 | arginine transport system permease protein | 1.648 | (0.014) | 0.572 | (0.007) | |
YPTB1384 (poxB) | YPO1358 | pyruvate dehydrogenase [cytochrome] | 1.521 | (0.009) | |||
YPTB1411 (ansB) | YPO1386 | putative L-asparaginase II precursoR | 1.869 | (0.013) | |||
YPTB1434 (aspC) | YPO1410 | aspartate aminotransferase | 1.447 | (0.004) | |||
YPTB1438 (pepN) | YPO1414 | putative aminopeptidase N | 1.432 | (0.041) | |||
YPTB1541 (ysuJ) | YPO1529 | putative decarboxylase | 2.092 | (< 0.001) | |||
YPTB1621 (aroP) | YPO1743 | aromatic amino acid transport protein | 1.68 | (0.006) | |||
YPTB1641 (hpaF) | YPO1765 | 5-carboxymethyl-2-hydroxymuconate delta-isomerase | 1.812 | (0.015) | |||
YPTB1656 (ptrB) | YPO1780 | oligopeptidase B | 1.695 | (0.006) | |||
YPTB1889 (lysA) | or1363 | possible diaminopimelate decarboxylase | 1.621 | (0.01) | 0.45 | (< 0.001) | |
YPTB2001 (prsA) | YPO2013 | ribose-phosphate pyrophosphokinase | 0.55 | (< 0.001) | |||
YPTB2019 | YPO2037 | conserved hypothetical protein | 1.56 | (0.021) | |||
YPTB2067 | YPO2138 | putative aminotransferase | 1.978 | (< 0.001) | |||
YPTB2105 (oppA) | YPO2182 | periplasmic oligopeptide-binding protein precursoR | 0.466 | (< 0.001) | |||
YPTB2108 (oppD) | YPO2185 | oligopeptide transport ATP-binding protein | (< 0.001) | ||||
YPTB2126 (trpB) | YPO2204 | tryptophan synthase beta chain | 2.22 | (< 0.001) | |||
YPTB2258 (mppA) | YPO2339 | putative periplasmic murein peptide-binding protein | 1.376 | (0.039) | |||
YPTB2262 (tyrR) | YPO2344 | transcriptional regulatory protein | 0.486 | (< 0.001) | |||
YPTB2295 (gloA) | YPO2381 | lactoylglutathione lyase | 1.666 | (< 0.001) | 1.229 | (0.042) | |
YPTB2437 (pepT) | YPO1631 | peptidase T | 0.488 | (0.007) | |||
YPTB2548 (glnH) | YPO2511 | putative glutamine-binding periplasmic protein | 1.797 | (0.014) | |||
YPTB2549 (glnP) | YPO2512 | putative glutamine transport system permease | 1.704 | (0.024) | |||
YPTB2550 (glnQ) | YPO2513 | putative glutamine transport ATP-binding protein | 1.56 | (0.027) | |||
YPTB2632 (aroC) | YPO2751 | chorismate synthase | 0.675 | (0.031) | |||
YPTB2698 | YPO2975 | putative aminotransferase | 2.151 | (< 0.001) | |||
YPTB2714 (cysK) | YPO2992 | cysteine synthase A | 2.108 | (0.005) | |||
YPTB2723 | YPO3002 | putative permease | 1.328 | (0.036) | |||
YPTB2725 | YPO3004 | putative aminopeptidase (pseudogene. F/S) | 1.526 | (0.022) | 1.685 | (0.006) | |
YPTB2784 (gcvR) | YPO3063 | glycine cleavage system transcriptional repressoR | 2.302 | (<0.001) | |||
YPTB2869 (glyA) | YPO2907 | serine hydroxymethyltransferase | 1.783 | (0.001) | |||
YPTB2882 (yfhB) | YPO2924 | putative membrane protein | 1.737 | (0.006) | |||
YPTB2909 | YPO2699 | conserved hypothetical protein | 1.513 | (0.017) | |||
YPTB2942 (ureC) | YPO2667 | urease alpha subunit | 0.333 | (<0.001) | |||
YPTB2943 (ureB) | YPO2666 | urease beta subunit | 0.2 | (<0.001) | |||
YPTB2944 (ureA) | YPO2665 | urease gamma subunit | 0.324 | (<0.001) | |||
YPTB2961 (proX) | YPO2645 | glycine betaine-binding periplasmic protein | 0.637 | (0.009) | |||
YPTB2986 | YPO1061 | conserved hypothetical protein | 0.551 | (0.031) | |||
YPTB3006 (dapD) | YPO1041 | 2.3.4.5-tetrahydropyridine-2-carboxylate N-succinyltransferase | 0.398 | (< 0.001) | 1.445 | (0.005) | |
YPTB3181 (gcsH) | YPO0906 | glycine cleavage system H protein | 0.377 | (< 0.001) | |||
YPTB3182 (gcvT) | YPO0907 | aminomethyltransferase | 0.526 | (0.022) | |||
YPTB3189 (serA) | YPO0914 | D-3-phosphoglycerate dehydrogenase | 1.582 | (0.04) | 0.517 | (0.005) | |
YPTB3214 (proC) | YPO0942 | putative pyrroline-5-carboxylate reductase | 0.647 | (0.038) | |||
YPTB3474 | YPO0584 | putative symporter protein | 0.61 | (0.007) | |||
YPTB3570 (aroQ) | YPO3660 | putative class II dehydroquinase | 0.721 | (0.036) | |||
YPTB3658 (metA) | YPO3727 | homoserine O-succinyltransferase | 1.776 | (0.018) | |||
YPTB3749 (aroB) | YPO0152 | 3-dehydroquinate synthase | 0.612 | (0.039) | |||
YPTB3813 (gdhA) | YPO3971 | NADP-specific glutamate dehydrogenase | 1.671 | (0.005) | |||
YPTB3853 (cysM) | or2495 | pyridoxal-phosphate dependent protein (pseudogene. partial) | 0.415 | (< 0.001) | |||
YPTB3957 | YPO4111 | putative periplasmic solute-binding protein | 1.59 | (0.006) | |||
F: nucleotide transport and metabolism | |||||||
YPTB0250 (udp) | YPO3786 | uridine phosphorylase | 0.486 | (0.005) | |||
YPTB0519 (nrdD) | YPO3454 | anaerobic ribonucleoside-triphosphate reductase | 0.614 | (0.024) | |||
YPTB0584 (deoD) | YPO0440 | purine nucleoside phosphorylase | 0.607 | (0.025) | |||
YPTB0623 (carA) | YPO0481 | carbamoyl-phosphate synthase small chain | 0.609 | (< 0.001) | 0.747 | (0.028) | |
YPTB0624 (carB) | YPO0482 | carbamoyl-phosphate synthase large chain | 0.621 | (0.022) | 0.546 | (0.005) | |
YPTB0754 (pyrG) | YPO3377 | CTP synthase | 0.469 | (< 0.001) | |||
YPTB0901 (gpt) | YPO3225 | xanthine-guanine phosphoribosyltransferase | 0.68 | (0.035) | |||
YPTB0991 (apt) | YPO3123 | adenine phosphoribosyltransferase | 1.447 | (0.042) | |||
YPTB1253 (nrdB) | YPO1213 | ribonucleoside-diphosphate reductase 1 beta chain | 0.489 | (0.003) | |||
YPTB1254 (nrdA) | YPO1214 | ribonucleoside-diphosphate reductase 1 alpha chain | 0.328 | (< 0.001) | 0.707 | (0.014) | |
YPTB1439 (pyrD) | YPO1415 | dihydroorotate dehydrogenase | 1.331 | (0.037) | |||
YPTB2001 (prsA) | YPO2013 | ribose-phosphate pyrophosphokinase | 0.55 | (< 0.001) | |||
YPTB2102 (tdk) | YPO2176 | thymidine kinase | 0.75 | (0.034) | |||
YPTB2706 (nupC) | YPO2983 | nucleoside permease | 1.674 | (0.018) | |||
YPTB2781 (purC) | YPO3059 | phosphoribosylaminoimidazole-succinocarboxamide synthase (pseudogene. IS | 0.598 | (0.009) | |||
YPTB2794 (upp) | YPO2827 | uracil phosphoribosyltransferase | 0.515 | (0.002) | |||
YPTB2796 (purN) | YPO2829 | putative phosphoribosylglycinamide formyltransferase | 1.842 | (0.038) | |||
YPTB2803 (ppx) | YPO2837 | putative exopolyphosphatase | 0.564 | (< 0.001) | |||
YPTB2956 (nrdI) | YPO2650 | NrdI protein homologue | 2.842 | (< 0.001) | |||
YPTB2957 (nrdE) | YPO2649 | ribonucleoside-diphosphate reductase 2 alpha chain | 4.745 | (< 0.001) | |||
YPTB2958 (nrdF) | YPO2648 | ribonucleoside-diphosphate reductase 2 beta chain | 2.671 | (0.002) | |||
YPTB3544 | YPO3689 | putative ribonuclease | 1.543 | (0.022) | |||
YPTB3854 | YPO4019 | putative phosphoribosyl transferase protein | 0.487 | (0.001) | |||
G: carbohydrate transport and metabolism | |||||||
YPTB0074 (pfkA) | YPO0078 | 6-phosphofructokinase | 1.593 | (0.017) | |||
YPTB0087 (glpF) | YPO0091 | glycerol uptake facilitator protein | 0.488 | (0.041) | |||
YPTB0241 (ugpC) | YPO3793 | sn-glycerol-3-phosphate transport. ATP-binding protein | 1.725 | (0.001) | |||
YPTB0542 | YPO0402 | PTS system. IIB component | 0.565 | (0.023) | |||
YPTB0548 | YPO0408 | putative aldolase | 1.968 | (0.021) | |||
YPTB0550 | YPO0410 | putative ABC transporter permease protein | 0.573 | (0.033) | |||
YPTB0569 | YPO0424 | putative pectinesterase | 0.268 | (< 0.001) | |||
YPTB0583 (deoB) | YPO0439 | phosphopentomutase | 1.651 | (0.03) | |||
YPTB0782 (dhaK) | YPO3350 | putative dihydroxyacetone kinase | 0.683 | (0.028) | |||
YPTB0799 | YPO3332 | putative sugar ABC transporter. permease protein | 1.787 | (0.018) | 1.912 | (0.01) | |
YPTB0803 (fucR) | YPO3327 | putative deoR-family regulatory protein | 0.435 | (< 0.001) | 1.521 | (0.007) | |
YPTB0804 (araD) | YPO3326 | L-ribulose-5-phosphate 4-epimerase | 0.537 | (< 0.001) | |||
YPTB0874 | or0625 | probable sugar aldolase | 1.455 | (0.042) | 1.627 | (0.011) | |
YPTB1079 | YPO2586 | conserved hypothetical protein | 0.559 | (0.025) | |||
YPTB1080 | YPO2587 | conserved hypothetical protein | 0.644 | (0.026) | |||
YPTB1119 (nagB) | YPO2627 | putative glucosamine-6-phosphate isomerase | 0.654 | (0.027) | |||
YPTB1140 | YPO1106 | conserved hypothetical protein | 0.705 | (0.034) | |||
YPTB1166 (gpmA) | YPO1133 | phosphoglycerate mutase 1 | 3.178 | (< 0.001) | |||
YPTB1290 (bglA) | YPO1254 | 6-phospho-beta-glucosidase | 1.802 | (0.008) | |||
YPTB1327 | YPO1295 | putative ABC transport integral membrane subunit | 1.976 | (0.009) | |||
YPTB1381 | YPO1355 | conserved hypothetical protein | 0.683 | (0.031) | |||
YPTB1522 (mglB) | YPO1507 | galactose-binding protein | 0.56 | (0.002) | 1.47 | (0.029) | |
YPTB1581 | YPO1572 | putative sugar transporteR | 0.587 | (0.023) | |||
YPTB1600 (ybtX) | YPO1915 | putative signal transduceR | 1.766 | (0.003) | |||
YPTB1632 (manZ) | YPO1756 | PTS system. mannose-specific IID component | 3.084 | (< 0.001) | |||
YPTB1633 (manY) | YPO1757 | PTS system. mannose-specific IIC component | 1.991 | (0.005) | |||
YPTB1634 (manX) | YPO1758 | PTS system. mannose-specific IIAB component | 2.674 | (< 0.001) | |||
YPTB1687 | YPO1814 | putative sugar ABC transporter. ATP-binding protein | 1.865 | (0.016) | |||
YPTB1930 | YPO1932 | putative sugar transporteR | 1.963 | (0.002) | |||
YPTB1975 | YPO1982 | putative dehydrogenase | 0.63 | (0.012) | |||
YPTB2047 (pykA) | YPO2064 | pyruvate kinase II | 0.486 | (< 0.001) | |||
YPTB2082 | YPO2156 | conserved hypothetical protein | 0.538 | (0.002) | 1.487 | (0.03) | |
YPTB2083 (gapA) | YPO2157 | glyceraldehyde 3-phosphate dehydrogenase A | 0.712 | (0.027) | |||
YPTB2147 | YPO2225 | conserved hypothetical protein | 1.297 | (0.041) | |||
YPTB2190 (mlc) | YPO2268 | putative ROK family transcriptional regulatory protein | 1.417 | (0.037) | |||
YPTB2205 | or3894 | ABC sugar/ribose transporter. permease subunit | 1.61 | (0.036) | |||
YPTB2306 (pykF) | YPO2393 | pyruvate kinase I | 2.282 | (< 0.001) | |||
YPTB2318 (ppsA) | YPO2409 | phosphoenolpyruvate synthase | 0.463 | (0.008) | |||
YPTB2356 (kduI) | YPO1725 | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase | 1.444 | (0.047) | |||
YPTB2360 | YPO1721 | putative sugar ABC transporter (permease) | 1.901 | (0.032) | |||
YPTB2463 (ptsG) | YPO1608 | PTS system. glucose-specific IIBC component | 4.033 | (< 0.001) | 1.607 | (0.002) | |
YPTB2515 | YPO2474 | conserved hypothetical protein | 0.593 | (0.036) | |||
YPTB2518 | YPO2477 | putative solute-binding protein | 0.62 | (0.029) | |||
YPTB2535 (rbsC) | YPO2499 | putative sugar transport system. permease protein | 1.7 | (0.013) | |||
YPTB2715 (ptsH) | YPO2993 | PTS system. phosphocarrier protein | 1.697 | (0.001) | |||
YPTB2716 (ptsI) | YPO2994 | PTS sytem. enzyme I component | 1.945 | (< 0.001) | |||
YPTB2717 (crr) | YPO2995 | PTS system. glucose-specific IIA component | 1.611 | (0.002) | 0.731 | (0.028) | |
YPTB2962 | YPO2644 | conserved hypothetical protein (pseudogene. IS100) | 2.68 | (< 0.001) | |||
YPTB3078 | YPO0834 | putative PTS transport protein | 1.742 | (0.025) | |||
YPTB3190 (rpiA) | YPO0915 | ribose 5-phosphate isomerase A | 0.601 | (0.021) | 0.641 | (0.039) | |
YPTB3195 (fbaA) | YPO0920 | fructose-bisphosphate aldolase class II | 1.325 | (0.048) | 0.699 | (0.015) | |
YPTB3196 (pgk) | YPO0921 | phosphoglycerate kinase | 1.366 | (0.024) | |||
YPTB3229 | YPO0957 | putative sugar transport system permease protein | 0.626 | (0.018) | |||
YPTB3230 (mglA) | YPO0958 | putative sugar transport ATP-binding protein | 0.624 | (0.005) | |||
YPTB3262 | YPO0988 | putative membrane protein | 2.167 | (< 0.001) | |||
YPTB3268 | YPO0995 | Sodium:galactoside symporter family protein | 1.764 | (0.014) | |||
YPTB3479 (exuT) | YPO0577 | ExuT transport protein | 1.866 | (0.001) | |||
YPTB3495 | YPO3550 | probable phosphosugar isomerase | 0.736 | (0.042) | |||
YPTB3536 (treB) | YPO3697 | PTS system. trehalose-specific IIBC component | 0.34 | (< 0.001) | 1.832 | (0.015) | |
YPTB3537 (treC) | YPO3696 | putative trehalose-6-phosphate hydrolase | 0.279 | (< 0.001) | |||
YPTB3609 | YPO3620 | putative carbohydrate transport protein | 1.459 | (0.02) | |||
YPTB3642 (lamB) | YPO3711 | maltoporin | 0.419 | (< 0.001) | |||
YPTB3779 (glpR) | YPO0120 | glycerol-3-phosphate repressor protein | 1.398 | (0.043) | |||
YPTB3783 (glgP) | YPO3938 | glycogen phosphorylase | 1.516 | (0.021) | 1.484 | (0.028) | |
YPTB3787 (glgB) | YPO3942 | 1.4-alpha-glucan branching enzyme | 0.603 | (0.001) | |||
H: coenzyme metabolism | |||||||
YPTB0014 (mobA) | or5120 | molybdopterin-guanine dinucleotide biosynthesis protein A | 0.703 | (0.032) | |||
YPTB0056 (kbl) | YPO0059 | 2-amino-3-ketobutyrate coenzyme A ligase | 0.639 | (0.02) | |||
YPTB0134 (ilvG) | YPO3901 | acetolactate synthase isozyme II large subunit | 0.627 | (0.039) | |||
YPTB0182 (hemX) | YPO3851 | putative uroporphyrin-III C-methyltransferase | 0.695 | (0.033) | |||
YPTB0264 | YPO3769 | conserved hypothetical protein | 0.695 | (0.01) | |||
YPTB0290 (thiC) | YPO3739 | thiamine biosynthesis protein ThiC | 2.329 | (0.012) | |||
YPTB0344 | YPO0286 | putative coproporphyrinogen III oxidase | 1.636 | (0.015) | |||
YPTB0463 (ispB) | YPO3513 | octaprenyl-diphosphate synthase | 0.731 | (0.03) | 0.614 | (0.002) | |
YPTB0559 | or0393 | hypothetical protein | 1.723 | (0.007) | (< 0.001) | ||
YPTB0561 | or0395 | putative protein involved in molybdopterin biosynthesis | 1.802 | (0.004) | (< 0.001) | ||
YPTB0616 (rpsT) | YPO0474 | 30S ribosomal protein S20 | 0.59 | (0.002) | |||
YPTB0664 | or0477 | hypothetical protein | 0.754 | (0.035) | 1.423 | (0.01) | |
YPTB0731 (folK) | YPO3400 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | 0.572 | (0.009) | |||
YPTB0739 (fhuC) | YPO3392 | ferrichrome transport ATP-binding protein FhuC | 1.932 | (0.046) | |||
YPTB0758 (ygcM) | YPO3373 | putative 6-pyruvoyl tetrahydrobiopterin synthase family protein | 0.556 | (0.002) | 0.629 | (0.011) | |
YPTB0761 (cysH) | YPO3370 | phosphoadenosine phosphosulfate reductase (pseudogene. F/S) | 1.593 | (0.002) | |||
YPTB0935 (ribH) | YPO3182 | 6.7-dimethyl-8-ribityllumazine synthase | 0.695 | (0.01) | |||
YPTB0940 (ispA) | YPO3176 | geranyltranstransferase | 0.635 | (0.026) | |||
YPTB1003 (wbyH) | YPO3111 | putative exported protein | 0.727 | (0.039) | |||
YPTB1091 (lipA) | YPO2598 | lipoic acid synthetase | 0.558 | (0.002) | |||
YPTB1163 (pnuC) | YPO1128 | intergral membrane NMN transport protein PnuC | 1.675 | (0.004) | |||
YPTB1181 (bioA) | YPO1150 | adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 3.377 | (< 0.001) | 1.592 | (0.038) | |
YPTB1183 (bioF) | YPO1152 | 8-amino-7-oxononanoate synthase | 3.799 | (< 0.001) | |||
YPTB1184 (bioC) | YPO1153 | biotin synthesis protein BioC | 1.784 | (0.004) | 1.636 | (0.011) | |
YPTB1185 (bioD) | YPO1154 | dethiobiotin synthetase | 2.499 | (0.002) | |||
YPTB1343 | YPO1312 | putative siderophore ABC transporter. ATP-binding subunit | 2.467 | (< 0.001) | |||
YPTB1384 (poxB) | YPO1358 | pyruvate dehydrogenase [cytochrome] | 1.521 | (0.009) | |||
YPTB1885 | or1359 | possible ThiF family | (< 0.001) | ||||
YPTB1886 | or1360 | conserved hypothetical protein | (< 0.001) | ||||
YPTB1888 | or1362 | conserved hypothetical protein | 1.886 | (0.001) | 0.314 | (< 0.001) | |
YPTB2033 | YPO2050 | conserved hypothetical protein | 0.542 | (0.002) | |||
YPTB2136 (btuR) | YPO2214 | cob(I)alamin adenosyltransferase | 1.975 | (0.002) | |||
YPTB2191 | YPO2269 | putative dethiobiotin synthetase | 0.3 | (< 0.001) | |||
YPTB2304 (ribE) | YPO2391 | riboflavin synthase alpha chain | 1.44 | (0.012) | |||
YPTB2459 | or3719 | hypothetical | 0.379 | (< 0.001) | |||
YPTB2561 (menF) | YPO2528 | menaquinone-specific isochorismate synthase | 0.522 | (0.011) | |||
YPTB3574 | YPO3657 | putative sodium/panthothenate symporter | 0.634 | (0.01) | |||
I: lipid metabolism | |||||||
YPTB0416 (psd) | YPO0364 | phosphatidylserine decarboxylase proenzyme | 1.846 | (0.024) | |||
YPTB0434 (aidB) | YPO0383 | putative acyl-CoA dehydrogenase | 1.613 | (0.049) | |||
YPTB0558 | or0392 | possible acyl-CoA dehydrogenase | 1.628 | (0.042) | (< 0.001) | ||
YPTB0674 | YPO0537 | putative AMP-binding enzyme-family protein | 0.616 | (0.047) | |||
YPTB0883 (yafH) | YPO3244 | probable acyl-CoA dehydrogenase | 2.292 | (< 0.001) | |||
YPTB1355 | YPO1324 | putative permease | 0.499 | (< 0.001) | |||
YPTB1450 (fabA) | YPO1430 | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase | 0.685 | (0.033) | |||
YPTB1480 | YPO1462 | putative acyl carrier protein | 1.669 | (0.048) | |||
YPTB2242 (acpD) | YPO2323 | acyl carrier protein phosphodiesterase | 0.703 | (0.013) | |||
YPTB2470 (acpP) | YPO1600 | acyl carrier protein | 0.661 | (0.002) | |||
YPTB2473 (fabH) | YPO1597 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 0.757 | (0.047) | 0.708 | (0.017) | |
YPTB2626 (fabB) | YPO2757 | 3-oxoacyl-[acyl-carrier-protein] synthase I | 0.605 | (0.009) | |||
YPTB2993 (lpxD) | YPO1054 | UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 1.258 | (0.018) | 0.761 | (0.007) | |
YPTB3849 | YPO4014 | putative membrane protein | 1.549 | (0.012) | |||
YPTB3856 | YPO4021 | hypothetical protein | 0.58 | (0.012) | |||
J: translation, ribosomal structure and biogenesis | |||||||
YPTB0034 (trmH) | YPO0037 | tRNA (guanosine-2'-O-)-methyltransferase | 1.673 | (0.023) | |||
YPTB0041 (rph) | YPO0044 | ribonuclease PH | 0.667 | (0.005) | |||
YPTB0276 (tufA) | or0197 | elongation factor Tu | 0.624 | (0.001) | |||
YPTB0279 (rplK) | YPO3751 | 50S ribosomal protein L11 | 0.703 | (0.027) | 0.682 | (0.018) | |
YPTB0280 (rplA) | YPO3750 | 50S ribosomal protein L1 | 0.681 | (0.027) | 0.689 | (0.031) | |
YPTB0281 (rplJ) | YPO3749 | 50S ribosomal protein L10 | 0.612 | (0.017) | |||
YPTB0282 (rplL) | YPO3748 | 50S ribosomal protein L7/L12 | 0.58 | (0.014) | |||
YPTB0408 (efp) | YPO0354 | elongation factor P | 1.7 | (0.018) | |||
YPTB0438 (rpsF) | YPO3539 | 30S ribosomal protein S6 | 0.597 | (0.018) | 0.501 | (0.003) | |
YPTB0441 (rplI) | YPO3536 | 50S ribosomal protein L9 | 0.476 | (< 0.001) | |||
YPTB0464 (rplU) | YPO3512 | 50S ribosomal protein L21 | 0.539 | (0.006) | |||
YPTB0465 (rpmA) | YPO3511 | 50S ribosomal protein L27 | 0.538 | (0.002) | 0.66 | (0.026) | |
YPTB0480 (infB) | YPO3496 | translation initiation factor IF2-2 (pseudogene. inframe deletion) | 0.598 | (< 0.001) | 0.661 | (< 0.001) | |
YPTB0483 (rpsO) | YPO3493 | 30S ribosomal protein S15 | 0.647 | (0.004) | |||
YPTB0484 (pnp) | YPO3490 | polyribonucleotide nucleotidyltransferase | 0.642 | (0.006) | |||
YPTB0529 (valS) | YPO3443 | valyl-tRNA synthetase | 0.648 | (0.004) | |||
YPTB0575 (prfC) | YPO0430 | peptide chain release factor 3 | 0.536 | (0.014) | 0.611 | (0.046) | |
YPTB0732 (pcnB) | YPO3399 | poly(A) polymerase | 0.74 | (0.025) | |||
YPTB0794 (map) | YPO3337 | methionine aminopeptidase | 3.582 | (< 0.001) | |||
YPTB0834 (rpsP) | YPO3295 | 30S ribosomal protein S16 | 0.682 | (0.044) | |||
YPTB0835 (rimM) | YPO3294 | 16S rRNA processing protein | 0.628 | (0.003) | 0.68 | (0.011) | |
YPTB0836 (trmD) | YPO3293 | tRNA (guanine-N1)-methyltransferase | 0.596 | (0.004) | |||
YPTB0844 (yfiA) | YPO3279 | putative sigma 54 modulation protein | 0.141 | (< 0.001) | 2.388 | (0.03) | |
YPTB0846 (rluD) | YPO3277 | ribosomal large subunit pseudouridine synthase d | 0.718 | (0.04) | |||
YPTB1058 | or0769 | conserved hypothetical protein | 1.626 | (0.021) | |||
YPTB1138 | YPO1104 | conserved hypothetical protein | 1.634 | (0.005) | |||
YPTB1366 | YPO1336 | putative RNA methyltransferase | 0.588 | (0.018) | |||
YPTB1411 (ansB) | YPO1386 | putative L-asparaginase II precursoR | 1.869 | (0.013) | |||
YPTB1417 (rpsA) | YPO1392 | 30S ribosomal protein S1 | 0.427 | (< 0.001) | |||
YPTB1436 (asnS) | YPO1412 | asparaginyl-tRNA synthetase | 1.628 | (0.022) | |||
YPTB1953 | YPO1955 | putative acetyltransferase | 0.594 | (0.017) | |||
YPTB2005 (prfA) | YPO2017 | peptide chain release factor 1 | 0.665 | (0.008) | 0.733 | (0.035) | |
YPTB2135 | YPO2213 | putative RNA pseudouridylate synthase-family protein | 0.691 | (0.032) | |||
YPTB2150 | YPO2228 | translation initiation factor SUI1 family protein | 1.574 | (0.008) | |||
YPTB2328 | YPO2420 | probable formyl transferase | 0.578 | (0.015) | |||
YPTB2336 (pheT) | YPO2428 | phenylalanyl-tRNA synthetase beta chain | 1.646 | (0.003) | |||
YPTB2337 (pheS) | YPO2429 | phenylalanyl-tRNA synthetase alpha chain | 0.615 | (0.016) | |||
YPTB2339 (rplT) | or3807 | 50S ribosomal protein L20 | 0.719 | (0.017) | |||
YPTB2618 (truA) | YPO2766 | tRNA pseudouridine synthase A | 0.52 | (0.01) | |||
YPTB2861 | YPO2898 | putative SpoU-family rRNA methylase | 0.586 | (< 0.001) | |||
YPTB3000 (frr) | YPO1047 | ribosome recycling factoR | 0.609 | (0.026) | |||
YPTB3002 (tsf) | YPO1045 | elongation factor Ts | 0.611 | (0.047) | |||
YPTB3003 (rpsB) | YPO1044 | 30S ribosomal protein S2 | 0.464 | (< 0.001) | |||
YPTB3009 | YPO1038 | Conserved hypothetical protein | 0.761 | (0.039) | |||
YPTB3126 | or3195 | Possible bacteriophage protein | 1.616 | (0.029) | |||
YPTB3507 (rpsI) | YPO3562 | 30S ribosomal protein S9 | 0.723 | (0.037) | 0.582 | (0.001) | |
YPTB3674 (rpsD) | YPO0233 | 30S ribosomal protein S4 | 0.576 | (0.002) | |||
YPTB3675 (rpsK) | YPO0232 | 30S ribosomal protein S11 | 0.594 | (0.017) | |||
YPTB3676 (rpsM) | YPO0231 | 30S ribosomal protein S13 | 0.518 | (0.005) | |||
YPTB3679 (rplO) | YPO0228 | 50S ribosomal protein L15 | 0.593 | (0.008) | |||
YPTB3682 (rplR) | YPO0225 | 50S ribosomal protein L18 | 0.563 | (0.005) | |||
YPTB3684 (rpsH) | or2793 | 30S ribosomal protein S8 | 0.638 | (0.042) | 0.619 | (0.032) | |
YPTB3687 (rplX) | YPO0221 | 50S ribosomal protein L24 | 0.574 | (0.005) | |||
YPTB3688 (rplN) | YPO0220 | 50S ribosomal protein L14 | 0.634 | (0.015) | |||
YPTB3689 (rpsQ) | YPO0219 | 30S ribosomal protein S17 | 0.58 | (0.016) | |||
YPTB3691 (rplP) | YPO0217 | 50S ribosomal protein L16 | 0.511 | (< 0.001) | |||
YPTB3692 (rpsC) | YPO0216 | 30S ribosomal protein S3 | 0.642 | (0.028) | |||
YPTB3693 (rplV) | YPO0215 | 50S ribosomal protein L22 | 0.466 | (0.003) | |||
YPTB3694 (rpsS) | YPO0214 | 30S ribosomal protein S19 | 0.612 | (0.013) | |||
YPTB3695 (rplB) | YPO0213 | 50S ribosomal protein l2 | 0.555 | (< 0.001) | 0.596 | (< 0.001) | |
YPTB3696 (rplW) | YPO0212 | 50S ribosomal protein L23 | 0.509 | (0.001) | |||
YPTB3698 (rplC) | YPO0210 | 50S ribosomal protein L3 | 0.465 | (0.001) | |||
YPTB3699 (rpsJ) | YPO0209 | 30S ribosomal protein S10 | 0.654 | (0.049) | 0.579 | (0.014) | |
YPTB3702 (tufA,tufB) | or2775 | elongation factor EF-Tu | 0.672 | (0.003) | |||
YPTB3703 (fusA) | YPO0202 | elongation factor G | 0.536 | (0.002) | |||
YPTB3946 (rnpA) | YPO4101 | ribonuclease P protein | 0.58 | (0.005) | |||
K: transcription | |||||||
YPTB0035 (spoT) | YPO0038 | guanosine-3'.5'-bisbis(diphosphate) 3'-pyrophosphydrolase | 0.684 | (0.011) | |||
YPTB0100 (cytR) | YPO0108 | transcriptional repressoR | 0.572 | (0.014) | |||
YPTB0167 (rho) | YPO3867 | transcription termination factoR | 0.467 | (< 0.001) | |||
YPTB0263 (rfaH) | YPO3770 | putative regulatory protein | 0.552 | (0.001) | |||
YPTB0278 (nusG) | YPO3752 | transcription antitermination protein | 0.57 | (0.001) | |||
YPTB0284 (rpoC) | YPO3746 | DNA-directed RNA polymerase beta' chain | 0.556 | (0.019) | |||
YPTB0291 (rsd) | YPO3737 | regulator of sigma D | 1.963 | (< 0.001) | 0.632 | (0.002) | |
YPTB0333 | YPO0276 | putative LysR-family transcriptional regulatoR | 0.62 | (0.044) | |||
YPTB0387 (rhaR) | YPO0333 | L-rhamnose operon transcriptional activatoR | 0.546 | (0.025) | |||
YPTB0479 (nusA) | YPO3497 | N utilization substance protein A | 0.653 | (0.006) | 0.595 | (0.001) | |
YPTB0599 (rob) | YPO0456 | putative right origin-binding protein | 0.588 | (0.012) | |||
YPTB0601 (arcA) | YPO0458 | aerobic respiration control protein | 0.465 | (0.001) | |||
YPTB0658 (rapA) | YPO0517 | RNA polymerase associated helicase | 0.547 | (0.004) | |||
YPTB0712 (pdhR) | YPO3420 | pyruvate dehydrogenase complex repressoR | 0.808 | (0.004) | 0.695 | (< 0.001) | |
YPTB0776 (rpoS) | YPO3355 | RNA polymerase sigma factor RpoS | 0.559 | (0.001) | |||
YPTB0803 (fucR) | YPO3327 | putative deoR-family regulatory protein | 0.435 | (< 0.001) | 1.521 | (0.007) | |
YPTB0820 | YPO3310 | putative transcriptional regulatory protein | 0.712 | (0.022) | |||
YPTB0857 (emrR) | YPO3266 | MarR-family transcriptional regulatory protein | 0.662 | (0.029) | |||
YPTB1088 (cspE) | YPO2595 | putative cold shock protein | 0.579 | (0.005) | |||
YPTB1258 (rcsB) | YPO1218 | probable two component response regulator component B | 0.693 | (0.016) | |||
YPTB1332 (psaE) | YPO1301 | putative regulatory protein | 1.986 | (0.001) | 0.474 | (< 0.001) | |
YPTB1392 (cspD) | YPO1366 | cold shock-like protein | 0.46 | (0.008) | |||
YPTB1423 (cspE) | YPO1398 | putative cold shock protein | 0.579 | (0.005) | |||
YPTB1610 (thuR) | or1188 | putative ThuR. regulatory protein for trehalosemaltose transp... | 1.403 | (0.025) | |||
YPTB1721 | YPO1849 | conserved hypothetical (pseudogene. F/S) | 1.366 | (0.025) | |||
YPTB1967 (hutC) | YPO1973 | putative GntR-family transcriptional regulatory protein | 0.739 | (0.018) | |||
YPTB2048 (hexR) | YPO2065 | hex regulon repressoR | 1.51 | (0.013) | |||
YPTB2072 (fadR) | YPO2144 | fatty acid metabolism regulatory protein | 1.494 | (0.01) | |||
YPTB2177 (araC) | YPO2258 | arabinose operon regulatory protein | 1.591 | (0.002) | |||
YPTB2190 (mlc) | YPO2268 | putative ROK family transcriptional regulatory protein | 1.417 | (0.037) | |||
YPTB2230 (rstA) | YPO2308 | two-component regulatory system. response regulator protein | 0.658 | (0.024) | |||
YPTB2262 (tyrR) | YPO2344 | transcriptional regulatory protein | 0.486 | (< 0.001) | |||
YPTB2288 (rovA) | YPO2374 | MarR-family transcriptional regulatory protein | 0.415 | (< 0.001) | |||
YPTB2367 (kdgR) | YPO1714 | IclR-family transcriptional regulatory protein | 0.75 | (0.029) | |||
YPTB2414 (cspC) | or3750 | cold shock protein | 0.685 | (0.014) | |||
YPTB2418 | YPO1651 | AsnC-family transcriptional regulatory protein | 0.435 | (< 0.001) | |||
YPTB2534 | YPO2498 | putative LacI-family transcriptional regulatory protein | 2.012 | (0.005) | |||
YPTB2737 | YPO3017 | putative rpiR-family transcriptional regulatory protein | 1.601 | (0.036) | |||
YPTB2763 (narP) | YPO3041 | nitrate/nitrite response regulator protein NarP | 0.715 | (0.043) | |||
YPTB2860 | YPO2897 | conserved hypothetical protein | 1.578 | (0.011) | 0.632 | (0.01) | |
YPTB2865 | YPO2903 | putative RNA-binding protein | 0.652 | (0.035) | |||
YPTB2890 (rnc) | YPO2718 | ribonuclease III | 0.673 | (0.013) | |||
YPTB2897 (rpoE) | YPO2711 | RNA polymerase sigma E factoR | 1.827 | (< 0.001) | |||
YPTB2939 (ureG) | YPO2670 | urease accessory protein | 0.293 | (< 0.001) | |||
YPTB3017 (gcvA) | YPO1029 | glycine cleavage system transcriptional activatoR | 1.634 | (0.049) | |||
YPTB3490 | YPO3545 | lysR-family transcriptional regulatory protein | 1.503 | (0.036) | 1.518 | (0.032) | |
YPTB3514 | YPO3570 | BolA-like protein | 1.315 | (0.035) | |||
YPTB3538 (rnk) | YPO3695 | regulator of nucleoside diphosphate kinase | 0.564 | (0.016) | |||
YPTB3577 (fiS) | or2359 | DNA-binding protein Fis | 0.611 | (0.034) | 0.58 | (0.02) | |
YPTB3579 | YPO3651 | Transcriptional regulator (pseudogene. inframe deletion) | 0.675 | (0.017) | |||
YPTB3764 (greB) | YPO0136 | transcription elongation factor | 0.69 | (0.004) | |||
YPTB3779 (glpR) | YPO0120 | glycerol-3-phosphate repressor protein | 1.398 | (0.043) | |||
YPTB3798 (gntR) | YPO3955 | gluconate utilization system Gnt-I transcriptional repressoR | 1.589 | (0.042) | |||
YPTB3847 (uhpA) | YPO4012 | two-component system response regulatoR | 2.004 | (0.006) | |||
YPTB3887 | YPO4034 | putative AraC-family transcriptional regulatory protein | 1.495 | (0.04) | |||
L: DNA replication, recombination and repair | |||||||
YPTB0046 (radC) | YPO0049 | putative DNA repair protein | 1.544 | (0.026) | 0.575 | (0.006) | |
YPTB0261 | or0185 | cytoplasmic Dnase (function similar to TatD) | 0.569 | (< 0.001) | |||
YPTB0292 | YPO3736 | conserved hypothetical protein | 1.453 | (0.017) | |||
YPTB0297 (hupA) | YPO3731 | DNA-binding protein HU-alpha | 0.455 | (< 0.001) | |||
YPTB0302 (or0218) | or0218 | putative transposase | 1.478 | (0.046) | 1.834 | (0.004) | |
YPTB0439 (priB) | YPO3538 | primosomal replication protein n | 0.557 | (0.045) | |||
YPTB0498 | YPO3475 | conserved hypothetical protein | 0.554 | (0.013) | |||
YPTB0579 | YPO0434 | putative metalloenzyme | 0.64 | (0.023) | |||
YPTB0658 (rapA) | YPO0517 | RNA polymerase associated helicase | 0.547 | (0.004) | |||
YPTB0913 (rdgC) | YPO3212 | possible recombination associated protein RdgC | 1.82 | (0.047) | |||
YPTB0941 (xseB) | YPO3175 | exodeoxyribonuclease VII small subunit | 0.647 | (0.044) | |||
YPTB0962 (hupB) | YPO3154 | DNA-binding protein HU-beta | 1.674 | (< 0.001) | 0.727 | (0.015) | |
YPTB0964 (ybaV) | YPO3152 | putative exported protein | 0.625 | (0.02) | |||
YPTB1418 (ihfB) | YPO1393 | integration host factor beta-subunit | 0.46 | (0.003) | |||
YPTB1799 | or1306 | putative modification methylase | 1.94 | (0.026) | |||
YPTB2040 (ruvA) | YPO2057 | Holliday junction DNA helicase | 1.225 | (0.04) | |||
YPTB2140 (topA) | YPO2218 | DNA topoisomerase I | 1.654 | (0.012) | 0.548 | (0.004) | |
YPTB2221 (ogt) | YPO2299 | putative methylated-DNA – protein-cysteine methyltransferase | 0.611 | (0.017) | |||
YPTB2335 (ihfA) | YPO2427 | integration host factor alpha-subunit | 1.626 | (0.001) | 0.623 | (0.001) | |
YPTB2458 | or3720 | hypothetical | 0.501 | (< 0.001) | |||
YPTB2792 | YPO3071 | conserved hypothetical protein | 1.337 | (0.026) | |||
YPTB2834 (xseA) | YPO2872 | exodeoxyribonuclease VII large subunit | 0.639 | (0.01) | |||
YPTB3389 | YPO0674 | putative MutT-family protein | 1.299 | (0.044) | |||
YPTB3577 (fiS) | or2359 | DNA-binding protein Fis | 0.611 | (0.034) | 0.58 | (0.02) | |
YPTB3757 | YPO0144 | putative hydrolase | 1.58 | (0.013) | |||
M: cell envelope biogenesis, outer membrane | |||||||
YPTB0051 (kdtX) | YPO0054 | lipopolysaccharide core biosynthesis glycosyl transferase | 0.592 | (0.001) | |||
YPTB0173 (rffH) | YPO3861 | glucose-1-phosphate thymidylyltransferase | 1.604 | (0.028) | |||
YPTB0415 | YPO0363 | putative membrane transport protein | 1.853 | (0.003) | |||
YPTB0491 | YPO3483 | multidrug efflux protein | 1.833 | (0.032) | |||
YPTB0493 (ibeB) | YPO3481 | probable outer membrane efflux lipoprotein | 1.863 | (0.015) | |||
YPTB0694 (lpxC) | YPO0561 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 0.787 | (0.04) | |||
YPTB0775 (nlpD) | YPO3356 | lipoprotein | 1.345 | (0.019) | 0.732 | (0.015) | |
YPTB0906 | YPO3220 | conserved hypothetical protein | 0.651 | (0.038) | |||
YPTB0955 (yajG) | YPO3161 | putative lipoprotein | 1.48 | (0.021) | |||
YPTB0987 (kefA) | YPO3129 | putative potassium efflux system | 0.626 | (0.001) | |||
YPTB1002 (prt) | YPO3112 | paratose synthase | 0.706 | (0.013) | |||
YPTB1008 (wbyK) | YPO3104 | putative mannosyltransferase | 0.527 | (0.001) | 0.669 | (0.03) | |
YPTB1014 (wzz) | YPO3096 | O-antigen chain length determinant | 0.577 | (0.019) | |||
YPTB1109 (cutE) | YPO2616 | putative apolipoprotein N-acyltransferase | 0.669 | (0.029) | |||
YPTB1160 (pal) | YPO1125 | peptidoglycan-associated lipoprotein Pal | 1.649 | (< 0.001) | 0.553 | (< 0.001) | |
YPTB1217 (pbpG) | YPO1176 | penicillin-binding protein 7 precursoR | 0.565 | (0.009) | |||
YPTB1261 (ompC) | YPO1222 | outer membrane protein C. porin | 0.284 | (< 0.001) | 1.371 | (0.034) | |
YPTB1266 (pla2) | YPO1231 | putative outer membrane-associated protease | 0.569 | (0.015) | |||
YPTB1309 (spr) | YPO1275 | putative lipoprotein | 0.499 | (< 0.001) | 0.646 | (0.002) | |
YPTB1381 | YPO1355 | conserved hypothetical protein | 0.683 | (0.031) | |||
YPTB1435 | YPO1411 | putative outer membrane porin C protein | (< 0.001) | ||||
YPTB1453 (ompA) | YPO1435 | putative outer membrane porin A protein | 0.355 | (< 0.001) | |||
YPTB1514 | YPO1498 | putative exported protein | 0.301 | (< 0.001) | |||
YPTB1528 (yohK) | YPO1513 | putative membrane protein | 1.513 | (0.043) | |||
YPTB1731 | YPO1860 | attachment invasion locus protein | 1.634 | (< 0.001) | |||
YPTB1819 | or1328 | hypothetical phage protein | 1.902 | (0.025) | |||
YPTB1964 | or1419 | putative outer membrane porin C protein | (< 0.001) | ||||
YPTB1975 | YPO1982 | putative dehydrogenase | 0.63 | (0.012) | |||
YPTB2081 | YPO2155 | putative exported protein | 0.796 | (0.009) | |||
YPTB2113 | YPO2190 | attachment invasion locus protein precursoR | 1.511 | (0.012) | (< 0.001) | ||
YPTB2117 (tonB) | YPO2193 | TonB | 5.465 | (< 0.001) | |||
YPTB2123 (ompW) | YPO2201 | putative exported protein | 0.165 | (< 0.001) | |||
YPTB2233 (sepC) | YPO2312 | insecticidal toxin (pseudogene. inframe insertion) | 1.424 | (0.045) | |||
YPTB2294 (sepC) | YPO2380 | insecticidal toxin (pseudogene. inframe insertion) | 1.424 | (0.045) | |||
YPTB2323 (nlpC) | YPO2415 | putative lipoprotein | 1.388 | (0.025) | |||
YPTB2979 (cutF) | YPO1067 | putative copper homeostasis lipoprotein | 1.794 | (0.001) | |||
YPTB2994 (ompH) | YPO1053 | cationic 19 kDa outer membrane protein precursoR | 1.69 | (< 0.001) | 0.538 | (< 0.001) | |
YPTB2995 | YPO1052 | putative surface antigen | 0.745 | (0.016) | |||
YPTB2996 | YPO1051 | putative membrane protein | 1.531 | (0.03) | |||
YPTB3194 | YPO0919 | putative membrane protein | 1.569 | (0.024) | |||
YPTB3277 | or3091 | Conserved hypothetical protein | 1.57 | (0.026) | |||
YPTB3282 | or3086 | Conserved hypothetical protein (partial. c-term) | 1.529 | (0.025) | |||
YPTB3285 | or3082 | Putative autotransporter secreted protein | 1.593 | (0.028) | |||
YPTB3313 (slyB) | YPO0752 | putative lipoprotein | 1.452 | (0.003) | |||
YPTB3407 (rfaE) | YPO0654 | ADP-heptose synthase | 0.709 | (0.042) | |||
YPTB3438 | YPO0617 | putative membrane protein | 1.993 | (0.004) | |||
YPTB3497 (mtgA) | YPO3552 | monofunctional biosynthetic peptidoglycan transglycosylase | 1.736 | (0.008) | |||
YPTB3513 (murA) | YPO3569 | UDP-N-acetylglucosamine1-carboxyvinyltransferase | 0.775 | (0.034) | |||
YPTB3717 | YPO0187 | putative glycosyl transferase | 0.657 | (0.013) | |||
YPTB3958 | YPO4112 | putative membrane protein | 1.69 | (0.004) | |||
YPTB3965 (glmU) | YPO4119 | UDP-N-acetylglucosamine pyrophosphorylase | 1.572 | (0.042) | |||
N: cell motility and secretion | |||||||
YPTB0071 (cpxP) | YPO0075 | putative exported protein | 0.337 | (< 0.001) | |||
YPTB0156 | YPO3881 | putative chaperone protein | 0.657 | (0.01) | |||
YPTB0158 | YPO3879 | putative outer membrane usher protein | 1.626 | (0.016) | |||
YPTB0359 | YPO0302 | putative outer membrane fimbrial usher protein | 1.398 | (0.049) | |||
YPTB0706 (hofB) | YPO3426 | putative type II secretion system protein | 0.711 | (0.043) | |||
YPTB1335 (psaB) | YPO1304 | chaperone protein PsaB precursoR | 0.216 | (< 0.001) | |||
YPTB1680 (flgJ) | YPO1807 | flagellar protein FlgJ | 1.906 | (0.01) | |||
YPTB1681 (flgK) | YPO1808 | flagellar hook-associated protein 1 | 0.616 | (0.01) | 0.682 | (0.034) | |
YPTB1682 (flgL) | YPO1809 | flagellar hook-associated protein 3 | 1.514 | (0.041) | |||
YPTB1693 | YPO1820A | 2.053 | (0.011) | ||||
YPTB1695 (fliN) | YPO1822 | flagellar motor switch protein FliN | 1.79 | (0.021) | |||
YPTB1698 (fliK) | YPO1825 | flagellar hook-length control protein FliK | 1.941 | (0.006) | |||
YPTB1919 | YPO1920 | probable fimbrial usher protein | 1.461 | (0.019) | |||
YPTB2396 (cheZ) | YPO1681 | chemotaxis protein CheZ | 1.477 | (0.027) | |||
YPTB2405 (cheA) | YPO1666 | chemotaxis protein CheA | 1.725 | (0.015) | |||
YPTB2843 | YPO2881 | putative fimbrial biogenesis protein | 0.686 | (0.022) | |||
YPTB3347 (fliG) | YPO0715 | puative flagellar motor switch protein | 1.68 | (0.03) | 1.722 | (0.024) | |
YPTB3357 | YPO0704 | flagellar assembly protein | 0.611 | (0.049) | |||
YPTB3896 | YPTB3896 | fimbrial protein | 1.644 | (0.021) | |||
No COG | |||||||
YPTB0092 | YPO0100 | hypothetical protein | 1.623 | (0.025) | 0.434 | (< 0.001) | |
YPTB0094 | YPO0102 | putative exported protein | 0.503 | (< 0.001) | |||
YPTB0123 (yijD) | YPO3912 | putative membrane protein | 0.669 | (0.033) | |||
YPTB0139 | YPO3895 | putative membrane protein | 0.717 | (0.036) | |||
YPTB0141 | YPTB0141 | putative membrane protein | 1.774 | (0.026) | |||
YPTB0148 | or0096 | colicin (pseudogene. partial) | 1.493 | (0.013) | |||
YPTB0149 | or0097 | putative colicin immunity protein | 1.605 | (0.045) | |||
YPTB0151 (imm2) | or0099 | pyocin S2 immunity protein | 1.549 | (0.013) | 0.486 | (< 0.001) | |
YPTB0212 (dcrB) | YPO3823 | putative lipoprotein | 0.758 | (0.028) | |||
YPTB0237 | or5000 | putative exported protein | 1.357 | (0.048) | |||
YPTB0244 | or0169 | hypothetical | 0.517 | (< 0.001) | |||
YPTB0362 | YPO0306 | conserved hypothetical protein (pseudogene. F/S) | 0.66 | (0.036) | |||
YPTB0391 | YPO0337 | putative exported protein | 0.527 | (< 0.001) | |||
YPTB0406 | YPO0352 | putative lipoprotein | 1.294 | (0.042) | |||
YPTB0449 | YPO3527 | conserved hypothetical protein | 2 | (< 0.001) | |||
YPTB0499 | YPO3474 | hypothetical protein | 1.509 | (0.036) | |||
YPTB0505 | YPO3468 | hypothetical protein | 1.632 | (0.026) | |||
YPTB0546 | YPO0406 | putative exported protein | 2.397 | (< 0.001) | |||
YPTB0560 | or0394 | hypothetical protein | 1.636 | (0.028) | 0.271 | (< 0.001) | |
YPTB0593 | YPO0450 | putative membrane protein | 0.736 | (0.025) | 1.464 | (0.007) | |
YPTB0651 | YPO0511 | hypothetical protein | 0.576 | (0.02) | |||
YPTB0657 | YPO0516 | hypothetical protein | 0.457 | (0.001) | |||
YPTB0666 | or4788 | putative IS1400 transposase B | 2.101 | (< 0.001) | |||
YPTB0678 | YPO0544 | putative membrane protein | 0.631 | (0.009) | |||
YPTB0768 (ygbE) | YPO3363 | putative membrane protein | 1.735 | (0.007) | |||
YPTB0793 | YPO3339 | hypothetical protein | 1.679 | (0.023) | 1.94 | (0.005) | |
YPTB0795 | YPO3336 | conserved hypothetical protein | 3 | (< 0.001) | |||
YPTB0903 (crl) | YPO3223 | curlin genes regulatory protein | 2.098 | (< 0.001) | |||
YPTB0957 | YPO3159 | hypothetical protein | 1.521 | (0.034) | |||
YPTB0978 (ymoA) | YPO3138 | modulating protein YmoA (histone-like protein) | 0.509 | (< 0.001) | |||
YPTB0979 | YPO3137 | conserved hypothetical protein | 0.469 | (< 0.001) | |||
YPTB0980 | YPO3136 | hypothetical protein | 0.587 | (0.01) | |||
YPTB1004 (wzx) | or0734 | putative O-unit flippase | 0.642 | (0.007) | |||
YPTB1018 (ushB) | or0747 | 5'-nucleotidase/UDP-sugar diphosphatase | 1.34 | (0.031) | |||
YPTB1041 | YPO2820 | hypothetical protein | 1.394 | (0.029) | |||
YPTB1042 (int) | or4598 | phage integrase (pseudogene. Partial) | 1.483 | (0.046) | |||
YPTB1043 | or0754 | hypothetical | 0.569 | (0.002) | |||
YPTB1130 (trp1400A) | or4531 | IS1400 transposase A | 2.136 | (< 0.001) | |||
YPTB1167 (psiF) | YPO1134 | putative starvation-inducible protein | 2.04 | (0.014) | |||
YPTB1202 (xapB) | YPO1172 | xanthosine permease (pseudogene. IS1541) | 1.381 | (0.03) | 1.499 | (0.009) | |
YPTB1220 | YPO1179 | conserved hypothetical protein | 0.702 | (0.038) | |||
YPTB1287 | or0929 | putative bacteriophage tail fiber protein | 1.853 | (0.01) | |||
YPTB1291 | YPO1255 | hypothetical protein | 0.361 | (< 0.001) | |||
YPTB1303 | YPO1269 | conserved hypothetical protein | 1.754 | (0.008) | |||
YPTB1334 (psaA) | YPO1303 | pH 6 antigen precursor (antigen 4) (adhesin) | (< 0.001) | ||||
YPTB1359 | YPO1328 | putative membrane protein | 1.723 | (0.003) | |||
YPTB1515 | YPO1499 | putative membrane protein | 1.521 | (0.045) | |||
YPTB1543 (ysuH) | YPO1531 | putative siderophore biosynthetic enzyme | 1.896 | (0.02) | |||
YPTB1583 | YPO1574 | putative exported protein | 0.605 | (< 0.001) | |||
YPTB1602 (int) | or4274 | integrase | 0.592 | (0.026) | |||
YPTB1616 | or1193 | conserved hypothetical protein | 0.677 | (0.016) | 1.488 | (0.014) | |
YPTB1619 | YPO1741 | hypothetical protein | 1.496 | (0.025) | |||
YPTB1622 | YPO1744 | putative exported protein | 1.671 | (0.019) | |||
YPTB1663 | YPO1788 | putative acyl carrier protein | 1.57 | (0.049) | |||
YPTB1664 | YPO1789 | putative membrane protein | 1.638 | (0.031) | |||
YPTB1668 (invA) | or1234 | putative invasin | 0.5 | (< 0.001) | 0.397 | (< 0.001) | |
YPTB1705 | YPTB1705 | putative phage minor tail protein | 1.794 | (0.002) | |||
YPTB1722 | YPO1850 | hypothetical protein | 1.593 | (0.045) | |||
YPTB1734 | YPO1864 | conserved hypothetical protein | 0.679 | (0.003) | |||
YPTB1752 | or4178 | O protein [Enterobacteria phage 186] gb|AAC34159.1| (U32222)... | 0.49 | (0.01) | |||
YPTB1785 | or4145 | hypothetical protein | 0.453 | (< 0.001) | |||
YPTB1786 | or4144 | hypothetical protein | 1.605 | (0.042) | |||
YPTB1798 (yfdM) | or1305 | conserved hypothetical protein | 1.506 | (0.043) | |||
YPTB1801 | or1309 | hypothetical protein | 0.279 | (< 0.001) | |||
YPTB1802 | or1310 | hypothetical protein | 0.449 | (0.01) | |||
YPTB1815 | or1324 | putative phage protein | 1.57 | (0.037) | |||
YPTB1821 | YPTB1821 | putative acyl carrier protein | 1.57 | (0.049) | |||
YPTB1822 | or4135 | putative membrane protein | 1.638 | (0.031) | |||
YPTB1826 | or1333 | bacteriophage hypothetical protein | 1.754 | (0.04) | |||
YPTB1850 | or4114 | gpR [Enterobacteria phage P2] sp|P36933|VPR_BPP2 tAIL COMPLE... | 1.779 | (0.024) | |||
YPTB1858 | or4106 | similar to V protein phage 186 | 1.743 | (0.024) | |||
YPTB1862 | or4102 | putative phage replication protein | 0.536 | (0.011) | |||
YPTB1884 | or1358 | possible MFS Superfamliy multidrug-efflux transporter | (< 0.001) | ||||
YPTB1887 | or1361 | hypothetical protein | (< 0.001) | ||||
YPTB1893 | YPO1874 | conserved hypothetical protein | 1.593 | (0.034) | |||
YPTB1980 | YPO1987 | hypothetical protein (pseudogene. IS285) | 1.485 | (0.047) | |||
YPTB1986 | YPO1994 | hypothetical protein | 0.649 | (0.039) | |||
YPTB1987 | YPO1995 | hypothetical protein | 0.57 | (0.047) | |||
YPTB1996 | YPO2004 | putative membrane protein | 2.041 | (0.002) | |||
YPTB2000 | YPO2012 | putative membrane protein | 0.256 | (< 0.001) | |||
YPTB2092 | YPO2166 | putative exported protein | 0.671 | (0.027) | |||
YPTB2114 | YPO2191 | hypothetical protein | 0.28 | (< 0.001) | |||
YPTB2148 | YPO2226 | hypothetical protein | 1.855 | (0.007) | |||
YPTB2151 (osmB) | YPO2229 | osmotically inducible lipoprotein B precursoR | 2.229 | (< 0.001) | 1.413 | (0.032) | |
YPTB2219 | YPO2297 | hypothetical protein | 1.576 | (0.031) | |||
YPTB2227 | YPO2305 | putative exported protein | 1.37 | (0.015) | 0.774 | (0.042) | |
YPTB2229 | YPO2307 | conserved hypothetical protein | 0.708 | (0.026) | |||
YPTB2237 (asr) | YPO2318 | putative acid shock protein | 0.654 | (0.022) | |||
YPTB2269 (pspB) | YPO2350 | phage shock protein B | 1.983 | (0.018) | |||
YPTB2334 | YPO2426 | putative exported protein | 1.628 | (0.015) | |||
YPTB2353 (yfeE) | YPO2445 | putative yfeABCD locus regulatoR | 1.526 | (0.008) | |||
YPTB2358 (pelY) | YPO1723 | periplasmic pectate lyase precursoR | 2.081 | (0.001) | |||
YPTB2363 | YPO1718 | putative exported protein | 1.804 | (0.038) | |||
YPTB2387 | YPO1694 | conserved hypothetical protein | 1.794 | (0.008) | |||
YPTB2393 | YPO1686 | putative exported protein | 1.442 | (0.019) | |||
YPTB2417 (ylaC) | YPO1652 | putative membrane protein | 1.559 | (0.003) | |||
YPTB2419 | YPO1650 | hypothetical protein | 0.6 | (0.026) | |||
YPTB2420 | YPO1649 | conserved hypothetical protein | 1.758 | (0.004) | 2.658 | (< 0.001) | |
YPTB2421 | YPO1648 | probable histidine acid phosphatase | 1.474 | (0.045) | |||
YPTB2425 | YPO1643 | hypothetical protein | 1.662 | (0.01) | |||
YPTB2446 | YPO1619 | hypothetical protein | 1.504 | (0.019) | |||
YPTB2483 (dinI) | YPO1586 | DNA-damage-inducible protein I | 1.646 | (0.006) | |||
YPTB2495 | or1732 | glucans biosynthesis protein (pseudogene. deletions) | 1.503 | (0.024) | |||
YPTB2496 | or1737 | hypothetical | 0.433 | (0.001) | |||
YPTB2540 | or3654 | conserved hypothetical protein | 2.145 | (0.008) | |||
YPTB2552 | YPO2515 | hypothetical | 1.46 | (0.023) | 1.396 | (0.042) | |
YPTB2554 | YPO2521 | putative exported protein | 0.648 | (0.044) | |||
YPTB2562 | YPO2530 | conserved hypothetical protein | 0.527 | (0.026) | |||
YPTB2623 (flk) | YPO2760 | putative flagellar assembly regulatory protein. flk | 0.549 | (0.008) | |||
YPTB2699 | YPO2976 | conserved hypothetical protein | 4.448 | (< 0.001) | 1.458 | (0.016) | |
YPTB2704 | YPO2981 | putative exported protein | 1.628 | (0.015) | |||
YPTB2744 (yfeY) | YPO3026 | putative lipoprotein | 1.604 | (0.019) | |||
YPTB2753 | YPO3031 | putative acetyltransferase | 1.391 | (0.02) | |||
YPTB2750 | or3477 | hypothetical | 0.688 | (0.006) | |||
YPTB2787 | YPO3066 | hypothetical protein | 1.504 | (0.019) | |||
YPTB2822 | YPO2857 | putative exported protein | 1.718 | (0.031) | |||
YPTB2877 | YPO2918 | putative exported protein | 0.542 | (0.024) | |||
YPTB2893 | YPO2715 | putative membrane protein | 1.565 | (0.011) | |||
YPTB2922 | or3339 | hypothetical | 1.886 | (0.001) | |||
YPTB2935 | YPO2674 | putative exported protein | (< 0.001) | ||||
YPTB2951 | YPO2657 | putative mobilization protein | 0.566 | (< 0.001) | |||
YPTB2953 | YPO2653 | conserved hypothetical protein | 0.639 | (0.027) | |||
YPTB2954 (asr) | YPO2652 | putative acid shock protein | 1.815 | (0.033) | |||
YPTB3007 | YPO1040 | conserved hypothetical protein | 0.728 | (0.024) | 0.73 | (0.025) | |
YPTB3039 | YPO0791 | hypothetical protein | 0.545 | (0.007) | |||
YPTB3041 (ygeD) | YPO0792 | putative membrane protein | 0.617 | (0.015) | |||
YPTB3071 | YPO0822 | putative exported protein | 0.51 | (0.002) | |||
YPTB3111 | YPO0867 | putative membrane protein | 0.675 | (0.027) | |||
YPTB3177 | YPO0901 | putative exported protein | 1.442 | (0.019) | |||
YPTB3179 | YPO0904 | hypothetical protein | 1.708 | (0.002) | |||
YPTB3220 | YPO0948 | conserved hypothetical protein | 1.56 | (0.021) | |||
YPTB3256 (insA) | or3105 | insertion element protein | 1.939 | (< 0.001) | |||
YPTB3257 | YPO0983 | putative lipoprotein | 2.06 | (0.001) | |||
YPTB3280 | or3088 | Hypothetical | 0.606 | (0.009) | |||
YPTB3305 | YPO1002 | hypothetical protein | 1.679 | (0.023) | 1.94 | (0.005) | |
YPTB3342 | YPO0720 | putative flagellar regulatory protein | 1.492 | (0.007) | |||
YPTB3343 | YPO0719 | hypothetical protein | 1.563 | (0.038) | |||
YPTB3371 | YPO0694 | Putative membrane protein (pseudogene. inframe deletion) | 0.653 | (0.049) | |||
YPTB3421 | YPO0640 | hypothetical protein | 0.716 | (0.028) | |||
YPTB3454 | or2954 | Fragment of hemagglutinin/hemolysin-related protein | 0.653 | (0.025) | |||
YPTB3458 | or2950 | hypothetical | 1.92 | (0.005) | |||
YPTB3504 | YPO3559 | putative exported protein | 0.483 | (< 0.001) | |||
YPTB3534 | YPO3699 | putative exported protein | 0.676 | (0.038) | |||
YPTB3551 | YPO3681 | Insecticidal toxin TcaA | 0.619 | (0.047) | |||
YPTB3556 | YPO3675 | putative exported protein | 0.637 | (0.043) | |||
YPTB3627 | YPO3601 | conserved hypothetical protein | 0.595 | (0.006) | |||
YPTB3641 (malM) | YPO3710 | maltose operon periplasmic protein | 0.379 | (< 0.001) | |||
YPTB3769 (feoC) | YPO0131 | ferrous iron transport protein C | 1.899 | (< 0.001) | |||
YPTB3770 | YPO0130 | putative exported protein | 0.43 | (< 0.001) | |||
YPTB3781 | YPO3935 | putative membrane protein | 0.717 | (0.036) | |||
YPTB3789 | or2712 | putative invasin | 0.614 | (0.01) | |||
YPTB3811 (uspB) | YPO3969 | universal stress protein B | 0.665 | (0.04) | |||
YPTB3834 (pelY) | YPO3994 | periplasmic pectate lyase precursoR | 2.081 | (0.001) | |||
YPTB3835 | YPO3995 | putative exported protein | 1.804 | (0.038) | |||
YPTB3855 | YPO4020 | putative membrane protein | 0.422 | (< 0.001) | |||
YPTB3893 | YPO4040 | putative exported protein | 0.487 | (< 0.001) | |||
YPTB3908 | YPO4081 | putative membrane protein | 1.408 | (0.01) | |||
YPTB3917 (yiaF) | YPO4070 | putative exported protein | 1.554 | (0.016) | 0.701 | (0.047) | |
YPTB3922 | YPO4064 | hypothetical protein | 1.409 | (0.046) | |||
YPTB3923 | YPO4063 | putative membrane protein | 1.53 | (0.041) | |||
YPTB3944 | or2545 | hypothetical protein_ | 0.593 | (0.016) | |||
O: posttranslational modification, protein turnover, chaperones | |||||||
YPTB0404 (groES) | YPO0350 | 10 kDa chaperonin | 0.683 | (0.029) | 1.445 | (0.035) | |
YPTB0427 (hflK) | YPO0375 | putative membrane protein (pseudogene. inframe deletion) | 0.619 | (0.033) | |||
YPTB0494 | YPO3480 | conserved hypothetical protein | 0.444 | (< 0.001) | |||
YPTB0495 | YPO3479 | putative protease | 0.328 | (< 0.001) | |||
YPTB0518 (nrdG) | YPO3455 | anaerobic ribonucleoside-triphosphate reductase Activating protein | 0.439 | (0.001) | |||
YPTB0612 (dnaK) | YPO0469 | chaperone protein DnaK | 0.73 | (0.049) | 0.693 | (0.025) | |
YPTB0647 (clpB) | YPO0506 | putative Clp ATPase | 1.481 | (0.047) | 0.402 | (< 0.001) | |
YPTB0774 (pcm) | YPO3357 | protein-L-isoaspartate O-methyltransferase | 0.62 | (0.014) | |||
YPTB0925 (ahpC) | YPO3194 | putative alkyl hydroperoxide reductase subunit c | 0.545 | (< 0.001) | |||
YPTB0948 (cyoE) | YPO3168 | protoheme IX farnesyltransferase | 1.422 | (0.039) | |||
YPTB0958 (tig) | YPO3158 | Trigger factoR | 0.607 | (0.008) | |||
YPTB0995 (htpG) | YPO3119 | heat shock protein HtpG | 0.569 | (0.004) | |||
YPTB1025 | YPO3083 | conserved hypothetical protein | 0.66 | (0.014) | |||
YPTB1026 (ybbN) | YPO3082 | putative thioredoxin | 0.715 | (0.019) | |||
YPTB1034 (ppiB) | YPO3074 | peptidyl-prolyl cis-trans isomerase B | 1.419 | (0.013) | |||
YPTB1141 | YPO1107 | heat shock protein GrpE | 1.442 | (0.048) | |||
YPTB1406 (pflA) | YPO1381 | pyruvate formate-lyase 1 activating enzyme | 0.578 | (0.004) | |||
YPTB1871 | or1348 | similar to hypothetical bacteriophage P27 protein | 0.58 | (0.001) | |||
YPTB1945 | YPO1947 | putative thioredoxin | 1.646 | (0.002) | |||
YPTB2070 (dsbB) | YPO2141 | disulfide bond formation protein B | 1.636 | (< 0.001) | 0.757 | (0.023) | |
YPTB2084 | YPO2158 | conserved hypothetical protein | 0.683 | (0.003) | |||
YPTB2261 (tpx) | YPO2342 | thiol peroxidase | 2.414 | (< 0.001) | 0.527 | (< 0.001) | |
YPTB2297 | YPO2383 | conserved hypothetical protein | 0.741 | (0.025) | |||
YPTB2311 | YPO2401 | conserved hypothetical protein | 1.822 | (0.001) | |||
YPTB2312 | YPO2402 | putative ATP-dependent transporteR | 2.036 | (0.006) | |||
YPTB2313 | YPO2403 | conserved hypothetical protein | 2.213 | (0.002) | |||
YPTB2734 (cysT) | YPO3014 | sulfate transport system permease protein CysT | 0.714 | (0.029) | |||
YPTB2785 (bcp) | YPO3064 | bacterioferritin comigratory protein | 1.417 | (0.033) | |||
YPTB2806 | YPO2840 | putative heat shock protein | 0.674 | (0.027) | |||
YPTB2905 (pcp) | YPO2703 | putative pyrrolidone-carboxylate peptidase | 1.608 | (0.016) | |||
YPTB2938 (ureD) | YPO2671 | urease accessory protein | 0.377 | (< 0.001) | |||
YPTB2939 (ureG) | YPO2670 | urease accessory protein | 0.293 | (< 0.001) | |||
YPTB2940 (ureF) | YPO2669 | urease accessory protein | 0.268 | (< 0.001) | |||
YPTB2941 (ureE) | YPO2668 | urease accessory protein | 0.347 | (< 0.001) | |||
YPTB3408 (glnE) | YPO0653 | glutamate-ammonia-ligase adenylyltransferase | 1.792 | (0.046) | |||
YPTB3415 (gcp) | YPO0646 | putative glycoprotease | 0.568 | (0.009) | |||
YPTB3710 (fkpA) | YPO0195 | peptidyl-prolyl cis-trans isomerase | 0.571 | (0.007) | |||
YPTB3728 | YPO0176 | conserved hypothetical protein | 1.988 | (0.002) | |||
YPTB3734 (ppiA) | YPO0167 | peptidyl-prolyl cis-trans isomerase A | 0.757 | (0.015) | 0.61 | (< 0.001) | |
YPTB3930 (fdhE) | YPO4055 | putative formate dehydrogenase formation protein | 0.556 | (< 0.001) | 0.798 | (0.031) | |
P: inorganic ion transport and metabolism | |||||||
YPTB0071 (cpxP) | YPO0075 | putative exported protein | 0.337 | (< 0.001) | |||
YPTB0270 (trkH) | YPO3762 | Trk system potassium uptake protein TrkH | 0.634 | (0.018) | |||
YPTB0336 (hmuV) | YPO0279 | hemin transport system ATP-binding protein | 1.666 | (0.003) | 0.652 | (0.01) | |
YPTB0338 (hmuT) | YPO0281 | hemin-binding periplasmic protein | 1.684 | (0.015) | 0.605 | (0.019) | |
YPTB0339 (hmuS) | YPO0282 | hemin transport protein | 1.577 | (0.021) | 0.666 | (0.038) | |
YPTB0340 (hmuR) | YPO0283 | hemin receptor precursoR | 7.426 | (< 0.001) | |||
YPTB0343 | YPO0285 | conserved hypothetical protein | 1.774 | (0.009) | |||
YPTB0354 (terB) | YPO0296 | tellurite resistance protein | 0.504 | (0.002) | |||
YPTB0371 | YPO0315 | putative regulatory protein | 0.409 | (< 0.001) | |||
YPTB0516 (phnG) | YPO3457 | PhnG protein | 1.713 | (0.016) | |||
YPTB0521 | YPO3452 | putative ABC transporter transporter. ATP-binding protein | 1.679 | (0.029) | |||
YPTB0594 | YPO0451 | putative cation-transporting P-type ATPase | 0.653 | (0.046) | |||
YPTB0662 (thiP) | YPO0521 | thiamine transport system permease protein | 1.973 | (0.003) | 1.574 | (0.035) | |
YPTB0739 (fhuC) | YPO3392 | ferrichrome transport ATP-binding protein FhuC | 1.932 | (0.046) | |||
YPTB0740 (fhuD) | YPO3391 | ferrichrome-binding periplasmic protein precursoR | 1.835 | (0.021) | |||
YPTB0790 (yhjA) | YPO3342 | putative cytochrome C peroxidase | 0.479 | (< 0.001) | |||
YPTB0811 (katY) | YPO3319 | catalase-peroxidase | 0.602 | (0.008) | 2.344 | (< 0.001) | |
YPTB0986 | YPO3130 | conserved hypothetical protein | 1.749 | (0.003) | |||
YPTB1246 (katA) | YPO1207 | catalase | 0.324 | (< 0.001) | |||
YPTB1341 | YPO1310 | putative periplasmic substrate-binding transport protein | 3.085 | (< 0.001) | |||
YPTB1343 (yiuC) | YPO1312 | putative siderophore ABC transporter. ATP-binding subunit | 2.467 | (< 0.001) | |||
YPTB1409 (focA) | YPO1384 | putative formate transporter 1 | 0.563 | (0.005) | 1.638 | (0.013) | |
YPTB1549 (ysuR) | YPO1537 | putative iron-siderophore receptoR | 2.609 | (< 0.001) | 0.669 | (0.039) | |
YPTB1659 (ftnA) | YPO1783 | ferritin | 0.18 | (< 0.001) | |||
YPTB1725 | YPO1854 | putative membrane protein | 2.084 | (0.013) | |||
YPTB1939 | YPO1941 | putative membrane protein | 0.549 | (< 0.001) | |||
YPTB1940 | YPO1942 | putative exported protein | 1.776 | (0.003) | |||
YPTB1947 (tehB) | YPO1949 | putative tellurite resistance protein | 1.722 | (0.025) | |||
YPTB2044 (znuA) | YPO2061 | exported high-affinity zinc uptake system protein | 1.693 | (0.009) | |||
YPTB2052 | YPO2069 | putative integral membrane protein | 1.506 | (0.041) | |||
YPTB2108 (oppD) | YPO2185 | oligopeptide transport ATP-binding protein | (< 0.001) | ||||
YPTB2299 (sodB) | YPO2386 | superoxide dismutase [Fe] | (< 0.001) | ||||
YPTB2347 (yfeA) | YPO2439 | periplasmic-binding protein | 11.88 | (< 0.001) | |||
YPTB2348 (yfeB) | YPO2440 | ATP-binding transport protein | 3.141 | (< 0.001) | |||
YPTB2349 (yfeC) | YPO2441 | chelated iron transport system membrane protein | 4.375 | (< 0.001) | |||
YPTB2350 (yfeD) | YPO2442 | chelated iron transport system membrane protein | 2.104 | (< 0.001) | |||
YPTB2546 (dps) | YPO2509 | putative DNA-binding protein | 0.566 | (< 0.001) | |||
YPTB2682 (yfuA) | YPO2958 | iron(III)-binding periplasmic protein | 2.387 | (< 0.001) | |||
YPTB2743 | YPO3025 | conserved hypothetical protein | 1.598 | (0.049) | |||
YPTB2769 (ydeN) | YPO3047 | putative sulfatase | 0.382 | (< 0.001) | |||
YPTB2771 | YPO3049 | putative binding protein-dependent transport system. inner-membrane comp | 0.592 | (0.026) | |||
YPTB2803 (ppx) | YPO2837 | putative exopolyphosphatase | 0.564 | (< 0.001) | |||
YPTB2934 | YPO2675 | putative potassium channel protein | 0.236 | (< 0.001) | |||
YPTB2936 | YPO2673 | putative nickel transport protein | 0.398 | (< 0.001) | |||
YPTB2974 | YPO1072 | ABC transporter permease protein | 1.328 | (0.027) | |||
YPTB2979 (cutF) | YPO1067 | putative copper homeostasis lipoprotein | 1.794 | (0.001) | |||
YPTB3068 | YPO0819 | putative carbonic anhydrase | 0.344 | (< 0.001) | |||
YPTB3074 | YPO0829 | putative sulfatase | 1.622 | (0.023) | |||
YPTB3227 | YPO0955 | putative periplasmic substrate-binding transport protein | 3.085 | (< 0.001) | |||
YPTB3298 | YPO1011 | putative TonB-dependent outer membrane receptoR | 2.15 | (0.004) | 0.554 | (0.022) | |
YPTB3605 (ssuA) | YPO3624 | aliphatic sulfonates binding protein (pseudogene. insertion) | 1.534 | (0.048) | |||
YPTB3700 (bfr) | YPO0206 | bacterioferritin | 0.66 | (0.003) | |||
YPTB3701 (bfd) | or2776 | putative bacterioferritin-associated ferredoxin | 1.856 | (0.002) | |||
YPTB3706 | YPO0199 | conserved hypothetical protein | 1.467 | (0.009) | |||
YPTB3737 | YPO0164 | putative membrane receptor protein (pseudogene. inframe insertion) | 0.568 | (0.001) | |||
YPTB3767 (feoA) | YPO0133 | hypothetical ferrous iron transport protein A | 1.509 | (0.045) | 0.624 | (0.025) | |
YPTB3857 | YPO4022 | putative iron transport protein | 3.127 | (< 0.001) | |||
YPTB3858 | YPO4023 | putative iron transport permease | 2.236 | (< 0.001) | |||
YPTB3860 | YPO4025 | putative iron ABC transporter. ATP-binding protein | 2.216 | (< 0.001) | |||
YPTB3925 (sodA) | YPO4061 | superoxide dismutase [Mn] | 3.101 | (< 0.001) | 0.613 | (0.017) | |
YPTB3963 (pstS) | YPO4117 | putative phosphate-binding periplasmic protein | 1.741 | (< 0.001) | |||
Q: secondary metabolite biosynthesis, transport and catabolism | |||||||
YPTB1030 (ybbP) | YPO3078 | putative permease | 1.661 | (0.022) | 1.756 | (0.012) | |
YPTB1480 | YPO1462 | putative acyl carrier protein | 1.669 | (0.048) | |||
YPTB1544 (ysuG) | YPO1532 | putative siderophore biosynthetic enzyme | 2.403 | (0.005) | |||
YPTB1550 | YPO1538 | putative siderophore biosynthetic enzyme | 8.255 | (< 0.001) | 0.649 | (0.048) | |
YPTB1596 (irp2) | YPO1911 | yersiniabactin biosynthetic protein | 1.526 | (0.029) | |||
YPTB1966 (hutI) | YPO1972 | imidazolonepropionase | 0.632 | (0.004) | |||
YPTB2064 | YPO2082 | putative fumarylacetoacetate hydrolase family protein | 0.73 | (0.018) | |||
YPTB2470 (acpP) | YPO1600 | acyl carrier protein | 0.661 | (0.002) | |||
YPTB2471 (fabG) | YPO1599 | 3-oxoacyl-[acyl-carrier protein] reductase | 0.573 | (0.002) | |||
YPTB2561 (menF) | YPO2528 | menaquinone-specific isochorismate synthase | 0.522 | (0.011) | |||
YPTB2626 (fabB) | YPO2757 | 3-oxoacyl-[acyl-carrier-protein] synthase I | 0.605 | (0.009) | |||
YPTB3258 (yspI) | YPO0984 | N-acylhomoserine lactone synthase YspI | 0.494 | (0.032) | |||
YPTB3263 (iucA) | YPO0989 | aerobactin synthetase (subunit alpha) | 3.789 | (< 0.001) | |||
YPTB3265 (iucC) | YPO0992 | aerobactin synthetase (subunit beta) | 2.601 | (< 0.001) | |||
YPTB3266 (iucD) | YPO0993 | putative siderophore biosynthesis protein IucD | 2.151 | (0.002) | |||
YPTB3297 | YPO0777 | putative peptide/polyketide synthase subunit | 2.142 | (< 0.001) | |||
R: general function prediction only | |||||||
YPTB0026 | YPO0027 | conserved hypothetical protein | 0.616 | (0.018) | |||
YPTB0057 (tdh) | YPO0060 | threonine 3-dehydrogenase | 0.663 | (0.041) | |||
YPTB0063 (secB) | YPO0067 | protein-export protein | 0.683 | (0.012) | |||
YPTB0071 (cpxP) | YPO0075 | putative exported protein | 0.337 | (< 0.001) | |||
YPTB0156 | YPO3881 | putative chaperone protein | 0.657 | (0.01) | |||
YPTB0158 | YPO3879 | putative outer membrane usher protein | 1.626 | (0.016) | |||
YPTB0221 (ftsY) | YPO3814 | cell division protein (pseudogene. inframe deletion) | 0.71 | (0.035) | |||
YPTB0257 (aarF) | YPO3779 | ubiquinone biosynthesis protein | 0.68 | (0.048) | |||
YPTB0258 (tatA) | YPO3778 | Sec-independent protein translocase protein tatA | 0.685 | (0.003) | |||
YPTB0327 | YPO0270 | putative type III secretion apparatus protein | 0.658 | (0.014) | |||
YPTB0331 | YPO0274 | putative integral membrane protein | 2.083 | (< 0.001) | |||
YPTB0353 (terA) | YPO0295 | putative tellurite resistance protein | 0.565 | (< 0.001) | |||
YPTB0359 | YPO0302 | putative outer membrane fimbrial usher protein | 1.398 | (0.049) | |||
YPTB0374 (qor) | YPO0319 | quinone oxidoreductase | 1.393 | (0.04) | |||
YPTB0448 | YPO3528 | putative exported protein | 0.451 | (< 0.001) | |||
YPTB0466 | YPO3510 | putative membrane protein | 1.768 | (0.019) | |||
YPTB0493 (ibeB) | YPO3481 | probable outer membrane efflux lipoprotein | 1.863 | (0.015) | |||
YPTB0576 (osmY) | YPO0431 | osmotically inducible protein Y | 3.79 | (< 0.001) | 0.421 | (0.001) | |
YPTB0706 (hofB) | YPO3426 | putative type II secretion system protein | 0.711 | (0.043) | |||
YPTB0808 | YPO3322 | conserved hypothetical protein | 0.555 | (0.031) | |||
YPTB0832 (corE) | YPO3297 | putative membrane protein | 1.401 | (0.011) | |||
YPTB0839 (dcuB) | YPO3288 | anaerobic C4-dicarboxylate transporter (pseudogene. F/S) | 0.442 | (0.001) | |||
YPTB0878 | or0629 | 5-methylthioribose kinase | 1.955 | (0.029) | |||
YPTB0929 (yajC) | YPO3190 | putative membrane protein | 1.526 | (0.047) | |||
YPTB0965 | YPO3151 | conserved hypothetical protein | 1.553 | (0.047) | |||
YPTB1061 (yapC) | YPO2796 | putaive autotransporter protein | 1.82 | (0.003) | |||
YPTB1111 | YPO2618 | conserved hypothetical protein | 0.577 | (0.001) | |||
YPTB1155 | YPO1120 | conserved hypothetical protein | 1.404 | (0.003) | |||
YPTB1159 (tolB) | YPO1124 | TolB colicin import protein | 1.46 | (0.025) | |||
YPTB1194 | YPO1163 | putative membrane protein | 0.678 | (< 0.001) | |||
YPTB1210 | or4494 | possible ABC transporter multidrug efflux pump. permease subunit | 0.669 | (0.03) | |||
YPTB1321 | YPO1289 | conserved hypothetical protein | 1.662 | (0.026) | |||
YPTB1335 (psaB) | YPO1304 | chaperone protein PsaB precursoR | 0.216 | (< 0.001) | |||
YPTB1512 | YPO1496 | putative heme-binding protein | 2.456 | (< 0.001) | |||
YPTB1513 | YPO1497 | ABC transporter ATP-binding protein | 1.878 | (0.009) | 0.453 | (0.001) | |
YPTB1540 (ysuF) | YPO1528 | putative ferric iron reductase | 4.019 | (< 0.001) | |||
YPTB1646 (hpaC) | YPO1770 | 4-hydroxyphenylacetate 3-monooxygenase coupling protein | 1.613 | (0.023) | |||
YPTB1660 | YPO1784 | putative copper resistance protein | 3.934 | (< 0.001) | 0.703 | (0.017) | |
YPTB1680 (flgJ) | YPO1807 | flagellar protein FlgJ | 1.906 | (0.01) | |||
YPTB1693 | YPO1820A | 2.053 | (0.011) | ||||
YPTB1695 (fliN) | YPO1822 | flagellar motor switch protein FliN | 1.79 | (0.021) | |||
YPTB1728 (wrbA) | YPO1857 | trp repressor binding protein | 1.401 | (0.006) | |||
YPTB1733 (ydgC) | YPO1863 | putative membrane protein | 0.626 | (0.001) | |||
YPTB1919 | YPO1920 | probable fimbrial usher protein | 1.461 | (0.019) | |||
YPTB1944 | YPO1946 | ABC transporter. ATP-binding protein | 1.957 | (0.003) | 1.588 | (0.03) | |
YPTB1985 | YPO1993 | putative dehydrogenase | 1.586 | (0.007) | |||
YPTB2019 | YPO2037 | conserved hypothetical protein | 1.56 | (0.021) | |||
YPTB2101 (hns) | YPO2175 | Hns DNA binding protein | 0.405 | (0.001) | |||
YPTB2169 | or1554 | putative toxin transport protein (pseudogene. F/S) | 1.549 | (0.027) | |||
YPTB2289 | YPO2375 | putative aldo/keto reductase | 1.508 | (0.006) | |||
YPTB2291 | YPO2377 | putative membrane protein | 0.607 | (0.018) | 1.529 | (0.038) | |
YPTB2345 (marC) | YPO2437 | multiple antibiotic resistance protein | 1.771 | (0.022) | |||
YPTB2368 (ogl) | YPO1713 | oligogalacturonate lyase | 0.699 | (0.045) | |||
YPTB2390 | YPO1689 | putative lipoprotein | 1.312 | (0.032) | |||
YPTB2452 (ycfL) | YPO1612 | putative lipoprotein | 1.45 | (0.046) | |||
YPTB2459 | or3719 | hypothetical | 0.379 | (< 0.001) | |||
YPTB2471 (fabG) | YPO1599 | 3-oxoacyl-[acyl-carrier protein] reductase | 0.573 | (0.002) | |||
YPTB2488 | YPO2451 | conserved hypothetical protein | 0.671 | (0.026) | |||
YPTB2492 | or3693 | conserved hypothetical protein | 0.602 | (0.009) | |||
YPTB2553 | or3647 | conserved hypothetical protein | 0.573 | (0.006) | |||
YPTB2604 | or3598 | conserved hypothetical (pseudogene. F/S) | 1.86 | (0.004) | |||
YPTB2646 (ccmD) | or3557 | putative heme exporter protein D | 0.36 | (< 0.001) | |||
YPTB2722 | YPO3001 | putative pyridine nucleotide-disulphide oxidoreductase | 1.897 | (0.04) | |||
YPTB2723 | YPO3002 | putative permease | 1.328 | (0.036) | |||
YPTB2727 | YPO3007 | putative membrane protein | 1.932 | (0.008) | |||
YPTB2753 | YPO3031 | putative acetyltransferase | 1.391 | (0.02) | |||
YPTB2837 (engA) | YPO2875 | putative GTP-binding protein | 0.573 | (0.015) | |||
YPTB2843 | YPO2881 | putative fimbrial biogenesis protein | 0.686 | (0.022) | |||
YPTB2891 (lepB) | YPO2717 | signal peptidase I | 1.527 | (0.032) | 1.518 | (0.035) | |
YPTB2902 | YPO2706 | conserved hypothetical protein | 0.549 | (0.026) | 1.898 | (0.018) | |
YPTB3116 | or3203 | hypothetical protein | 0.556 | (0.022) | |||
YPTB3176 | YPO0900 | putative hemolysin III | 1.415 | (0.038) | |||
YPTB3223 | YPO0951 | Putative methyltransferase | 0.612 | (0.023) | |||
YPTB3238 | YPO0966 | putative kinase | 0.505 | (0.032) | |||
YPTB3285 | or3082 | Putative autotransporter secreted protein | 1.593 | (0.028) | |||
YPTB3291 | YPO0771 | ABC-transporter transmembrane protein | 1.705 | (0.014) | |||
YPTB3357 | YPO0704 | flagellar assembly protein | 0.611 | (0.049) | |||
YPTB3381 | YPO0684 | putative membrane protein | 1.67 | (0.014) | |||
YPTB3382 (exbD) | YPO0683 | ExbD/TolR-family transport protein | 9.812 | (< 0.001) | |||
YPTB3383 (exbB) | YPO0682 | MotA/TolQ/ExbB proton channel family protein | 4.164 | (< 0.001) | |||
YPTB3388 | YPO0676 | putative aldo/keto reductase family protein | 1.632 | (0.042) | |||
YPTB3438 | YPO0617 | putative membrane protein | 1.993 | (0.004) | |||
YPTB3464 | YPO0595 | conserved hypothetical protein | 0.528 | (0.005) | |||
YPTB3493 | YPO3548 | putative exported protein | 0.602 | (0.005) | |||
YPTB3496 | YPO3551 | putative exported protein | 0.553 | (< 0.001) | |||
YPTB3558 (tldD) | YPO3672 | putative modulator of DNA gyrase | 0.702 | (0.025) | |||
YPTB3568 | YPO3662 | conserved hypothetical protein | 1.489 | (0.008) | |||
YPTB3659 | YPO0247 | putative transferase | 1.289 | (0.029) | |||
YPTB3745 (gph) | YPO0156 | phosphoglycolate phosphatase | 0.596 | (0.022) | |||
YPTB3757 | YPO0144 | putative hydrolase | 1.58 | (0.013) | |||
YPTB3879 | or2640 | possible type I restriction enzyme (restriction subunit) | 1.554 | (0.044) | |||
YPTB3896 | YPO4044 | fimbrial protein | 1.644 | (0.021) | |||
YPTB3939 | YPO4093 | putative haloacid dehalogenase-like hydrolase | 1.753 | (0.02) | |||
YPTB3948 (yidC) | YPO4102 | probable membrane protein | 0.666 | (0.024) | 0.645 | (0.016) | |
YPTB3953 (yieG) | YPO4107 | Xanthine/uracil permeases family protein | 0.638 | (0.046) | 1.583 | (0.042) | |
S: function unknown | |||||||
YPTB0015 (mobA) | YPO0013A | molybdopterin-guanine dinucleotide biosynthesis protein A | 0.703 | (0.032) | |||
YPTB0020 | YPO0020 | conserved hypothetical protein | 0.493 | (< 0.001) | |||
YPTB0040 | YPO0043 | conserved hypothetical protein | 0.705 | (0.029) | 0.656 | (0.011) | |
YPTB0089 | YPO0093 | conserved hypothetical protein | 1.682 | (< 0.001) | 0.681 | (0.008) | |
YPTB0196 | or0133 | conserved hypothetical protein | 3.061 | (< 0.001) | |||
YPTB0219 | YPO3816A | 1.383 | (0.046) | ||||
YPTB0296 | YPO3732 | conserved hypothetical protein | 0.558 | (< 0.001) | |||
YPTB0378 | YPO0323 | conserved hypothetical protein | 1.483 | (0.016) | |||
YPTB0454 | YPO3522 | conserved hypothetical protein | 1.472 | (0.03) | |||
YPTB0478 | YPO3498 | conserved hypothetical protein | 0.734 | (0.038) | |||
YPTB0506 | or0367 | conserved hypothetical protein | 0.541 | (0.013) | |||
YPTB0547 | YPO0407 | conserved hypothetical protein | 1.999 | (< 0.001) | |||
YPTB0589 | YPO0445 | conserved hypothetical protein | 1.579 | (0.007) | |||
YPTB0600 (creA) | YPO0457 | putative exported protein | 1.924 | (< 0.001) | |||
YPTB0627 | YPO0485 | putative membrane protein | 1.523 | (0.018) | |||
YPTB0639 | YPO0498 | hypothetical protein | 0.302 | (< 0.001) | |||
YPTB0640 | YPO0499 | hypothetical protein | (< 0.001) | ||||
YPTB0641 | YPO0500 | conserved hypothetical protein | (< 0.001) | ||||
YPTB0642 | YPO0501 | conserved hypothetical protein | 0.346 | (< 0.001) | |||
YPTB0643 | YPO0502 | conserved hypothetical protein | (< 0.001) | ||||
YPTB0644 | YPO0503 | conserved hypothetical protein | 0.702 | (0.012) | |||
YPTB0646 | YPO0505 | conserved hypothetical protein | 0.355 | (< 0.001) | |||
YPTB0648 | YPO0507 | conserved hypothetical protein | 0.679 | (0.044) | |||
YPTB0649a | YPO0508 | hypothetical protein | 0.56 | (0.031) | |||
YPTB0650 | YPO0510 | hypothetical protein | 1.447 | (0.043) | 0.368 | (< 0.001) | |
YPTB0653 | YPO0512 | putative lipoprotein | 1.45 | (0.035) | 0.618 | (0.009) | |
YPTB0654 | YPO0513 | conserved hypothetical protein | 0.364 | (0.002) | |||
YPTB0655 | YPO0514 | putative OmpA-family membrane protein | 0.383 | (< 0.001) | |||
YPTB0679 | YPO0546 | conserved hypothetical protein | 1.35 | (0.036) | |||
YPTB0701 | YPO3431 | conserved hypothetical protein | 0.663 | (< 0.001) | |||
YPTB0744 | YPO3387 | conserved hypothetical protein | 2.792 | (< 0.001) | |||
YPTB0876 | or0627 | methionine salvage pathway enzyme E-2/E-2' | 1.533 | (0.007) | |||
YPTB0976 (ybaY) | YPO3140 | putative lipoprotein | 1.504 | (0.043) | |||
YPTB1021 | YPO3087 | conserved hypothetical protein | 1.394 | (0.029) | |||
YPTB1057 | YPO2801 | putative membrane protein | 1.682 | (0.044) | |||
YPTB1078 | YPO2585 | putative carbohydrate kinase | 1.704 | (0.035) | |||
YPTB1085 | YPO2592 | putative membrane protein | 0.609 | (0.015) | |||
YPTB1161 | YPO1126 | putative exported protein | 0.596 | (0.004) | |||
YPTB1215 | YPO1174 | hypothetical protein | 1.527 | (0.047) | |||
YPTB1222 | YPO1181 | putative membrane protein | 0.697 | (0.032) | |||
YPTB1227 | YPO1186 | conserved hypothetical protein | 0.634 | (0.005) | |||
YPTB1297 | YPO1261 | conserved hypothetical protein | 0.659 | (0.014) | |||
YPTB1387 | YPO1361 | putative membrane protein | 1.593 | (0.003) | |||
YPTB1389 | YPO1363 | putative virulence factoR | 0.632 | (0.043) | |||
YPTB1422 | YPO1397 | conserved hypothetical protein (pseudogene. inframe deletion) | 1.803 | (0.012) | |||
YPTB1432 | YPO1408 | putative exported protein | 0.671 | (0.044) | |||
YPTB1499 | YPO1483 | hypothetical protein | 1.491 | (0.029) | |||
YPTB1504 | YPO1487 | conserved hypothetical protein | 2.062 | (0.005) | |||
YPTB1571 | YPO1560 | conserved hypothetical protein | 1.34 | (0.036) | |||
YPTB1640 (hpaD) | YPO1764 | 3.4-dihydroxyphenylacetate 2.3-dioxygenase | 0.625 | (0.046) | |||
YPTB1729 | YPO1858 | putative exported protein | 0.704 | (0.037) | |||
YPTB1901 | or1366 | conserved hypothetical protein | 1.511 | (0.01) | |||
YPTB1902 | YPO1882 | conserved hypothetical protein | 1.552 | (< 0.001) | |||
YPTB1941 | YPO1943 | putative membrane protein | 2.118 | (0.004) | |||
YPTB2085 | YPO2159 | conserved hypothetical protein | 0.606 | (0.032) | |||
YPTB2146 | YPO2224 | putative membrane protein | 1.568 | (0.018) | |||
YPTB2214 | YPO2291 | putative virulence factoR | 0.638 | (0.023) | |||
YPTB2234 | YPO2315 | putative exported protein | 1.503 | (0.008) | |||
YPTB2265 | YPO2347 | putative membrane protein | 1.284 | (0.04) | |||
YPTB2314 | YPO2404 | conserved hypothetical protein | 2.602 | (< 0.001) | |||
YPTB2352 | YPO2444 | conserved hypothetical protein | 0.704 | (0.017) | |||
YPTB2388 | YPO1693 | conserved hypothetical protein | 1.569 | (0.038) | |||
YPTB2444 (ycfJ) | YPO1624 | putative exported protein | 2.296 | (0.001) | |||
YPTB2481 | YPO1588 | conserved hypothetical protein | 0.759 | (0.035) | |||
YPTB2526 | YPO2489 | conserved hypothetical protein | 1.361 | (0.02) | |||
YPTB2547 | YPO2510 | putative exported protein | 0.31 | (< 0.001) | |||
YPTB2594 | YPO2563 | conserved hypothetical protein | 0.563 | (< 0.001) | |||
YPTB2638 | YPO2745 | conserved hypothetical protein | 0.483 | (0.001) | |||
YPTB2651 (lemA) | YPO2732 | putative exported protein | 0.381 | (< 0.001) | |||
YPTB2660 | YPO2724 | putative membrane protein | 1.486 | (0.038) | |||
YPTB2661 | YPO2723 | possible OmpA family (pseudogene. IS100 insertion) | 1.796 | (0.048) | |||
YPTB2674 | YPO2949 | hypothetical protein | 1.753 | (0.045) | |||
YPTB2693 | YPO2970 | putative lipoprotein | 0.65 | (0.049) | |||
YPTB2694 | YPO2971 | putative lipoprotein | 0.454 | (< 0.001) | |||
YPTB2745 (ygiW) | YPO3027 | putative exported protein | 0.648 | (0.002) | |||
YPTB2907 | YPO2701 | putative membrane protein | 0.658 | (0.038) | |||
YPTB2981 | YPO1065 | conserved hypothetical protein | 0.721 | (0.035) | |||
YPTB3117 | YPO0874 | hypothetical protein | 0.675 | (0.039) | |||
YPTB3161 | or2087 | Hypothetical bacteriophage protein. | 0.64 | (0.033) | |||
YPTB3186 | YPO0911 | putative exported protein | 1.578 | (0.023) | |||
YPTB3187 | YPO0912 | conserved hypothetical protein | 0.612 | (0.006) | |||
YPTB3206 | YPO0934 | conserved hypothetical protein | 0.69 | (0.039) | |||
YPTB3222 | YPO0950 | conserved hypothetical protein | 0.547 | (0.006) | |||
YPTB3301 | or2158 | putative antigenic leucine-rich repeat protein | 0.581 | (0.004) | |||
YPTB3403 | YPO0659 | conserved hypothetical protein | 0.768 | (0.028) | 0.753 | (0.019) | |
YPTB3429 | YPO0626 | Conserved hypothetical | 0.619 | (0.034) | |||
YPTB3468 (hdeD) | YPO0590 | putative membrane protein | 0.209 | (< 0.001) | |||
YPTB3484 | YPO0572 | putative exported protein | 0.533 | (0.013) | |||
YPTB3485 (yqjD) | YPO0570 | putative membrane protein | 0.674 | (0.02) | 0.576 | (0.002) | |
YPTB3486 | YPO0569A | 0.606 | (0.026) | ||||
YPTB3510 | YPO3565 | putative membrane protein | 0.745 | (0.02) | |||
YPTB3573 (panF) | YPO3657A | sodium/pantothenate symporteR | 0.732 | (0.028) | |||
YPTB3581 | YPO3649 | putative gamma carboxymuconolactone decarboxylase | 0.573 | (0.01) | |||
YPTB3617 | or2852 | putative Rhs accessory genetic element | 0.632 | (0.037) | |||
YPTB3622 | YPO3607 | conserved hypothetical protein | 0.589 | (0.014) | |||
YPTB3748 | YPO0153 | conserved hypothetical membrane protein | 0.614 | (0.033) | |||
YPTB3773 | YPO0127 | conserved hypothetical protein | 2.928 | (< 0.001) | |||
YPTB3897 | YPO4045 | putative membrane protein | 0.609 | (0.015) | |||
T: signal transduction mechanisms | |||||||
YPTB0022 (ntrC) | YPO0022 | nitrogen regulation protein | 0.723 | (0.037) | |||
YPTB0035 (spoT) | YPO0038 | guanosine-3'.5'-bisbis(diphosphate) 3'-pyrophosphydrolase | 0.684 | (0.011) | |||
YPTB0071 (cpxP) | YPO0075 | putative exported protein | 0.337 | (< 0.001) | |||
YPTB0356 (terD) | YPO0298 | tellurium resistance protein | 1.485 | (0.034) | |||
YPTB0357 (terE) | YPO0299 | tellurium resistance protein | 1.501 | (0.005) | 0.72 | (0.019) | |
YPTB0468 (basS) | YPO3508 | two-component system sensor protein | 2.184 | (0.001) | |||
YPTB0541 | YPO0401 | putative transcriptional regulatoR | 0.652 | (0.035) | |||
YPTB0570 (hmsT) | YPO0425 | HmsT protein | 0.574 | (0.014) | 1.64 | (0.026) | |
YPTB0592 | YPO0449 | putative exported protein | 0.591 | (0.022) | |||
YPTB0601 (arcA) | YPO0458 | aerobic respiration control protein | 0.465 | (0.001) | |||
YPTB0734 (dksA) | YPO3397 | DnaK suppressor protein homologue | 0.508 | (< 0.001) | |||
YPTB0789 | YPO3343 | probable extracellular solute-binding protein | 0.462 | (0.001) | |||
YPTB1108 (glnH) | YPO2615 | putative amino acid-binding protein precursoR | 0.564 | (0.005) | |||
YPTB1258 (rcsB) | YPO1218 | probable two component response regulator component B | 0.693 | (0.016) | |||
YPTB1259 | YPO1219 | putative two component sensor kinase | 0.696 | (0.041) | |||
YPTB1922 | YPO1923 | Putative sensor protein | 1.451 | (0.044) | |||
YPTB1957 (narX) | YPO1959 | nitrate/nitrite sensor protein | 1.83 | (0.031) | |||
YPTB2099 | YPO2173 | probable response regulatoR | 1.533 | (0.043) | |||
YPTB2156 (cstA) | YPO2234 | putative carbon starvation protein A | 0.544 | (0.012) | 0.624 | (0.045) | |
YPTB2222 (fnr) | YPO2300 | fumarate and nitrate reduction regulatory protein | 0.699 | (0.001) | 1.584 | (< 0.001) | |
YPTB2230 (rstA) | YPO2308 | two-component regulatory system. response regulator protein | 0.658 | (0.024) | |||
YPTB2378 | YPO1703 | conserved hypothetical protein | 0.711 | (0.022) | |||
YPTB2396 (cheZ) | YPO1681 | chemotaxis protein CheZ | 1.477 | (0.027) | |||
YPTB2405 (cheA) | YPO1666 | chemotaxis protein CheA | 1.725 | (0.015) | |||
YPTB2435 (phoQ) | YPO1633 | sensor protein kinase | 0.527 | (< 0.001) | |||
YPTB2548 (glnH) | YPO2511 | putative glutamine-binding periplasmic protein | 1.797 | (0.014) | |||
YPTB2635 (sixA) | YPO2748 | putative phosphohistidine phosphatase | 1.508 | (0.002) | |||
YPTB2763 (narP) | YPO3041 | nitrate/nitrite response regulator protein NarP | 0.715 | (0.043) | |||
YPTB2894 (rseC) | YPO2714 | sigma E factor regulatory protein | 1.431 | (0.034) | |||
YPTB2895 (rseB) | YPO2713 | sigma E factor regulatory protein | 1.466 | (0.04) | |||
YPTB2896 (rseA) | YPO2712 | sigma E factor negative regulatory protein | 1.652 | (< 0.001) | |||
YPTB3350 (fleR) | YPO0712 | sigma-54 transcriptional regulatory protein | 2.134 | (0.004) | |||
YPTB3408 (glnE) | YPO0653 | glutamate-ammonia-ligase adenylyltransferase | 1.792 | (0.046) | |||
YPTB3410 | YPO0651 | putative exported protein | 1.988 | (< 0.001) | |||
YPTB3463 (terX) | YPO0596 | putative tellurium resistance protein | 0.522 | (< 0.001) | |||
YPTB3500 (arcB) | YPO3555 | aerobic respiration control sensor/response regulatory protein | 0.674 | (0.012) | |||
YPTB3566 (yhdA) | YPO3664 | putative exported protein | 1.836 | (< 0.001) | |||
YPTB3729 (crp) | YPO0175 | cAMP-regulatory protein | 0.641 | (< 0.001) | |||
YPTB3812 (uspA) | YPO3970 | universal stress protein A | 0.291 | (< 0.001) | 1.554 | (0.038) | |
YPTB3847 (uhpA) | YPO4012 | two-component system response regulatoR | 2.004 | (0.006) | |||
YPTB3957 | YPO4111 | putative periplasmic solute-binding protein | 1.59 | (0.006) | |||
YPTB2341 (infC) | YPO2432 | translation initiation factor IF-3 | 0.539 | (< 0.001) |