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Table 4 Multi-type herds and sheep flocks detected by SSR1_SSR8 and Sna BI-Spe I PFGE.

From: Comparative analysis of Mycobacterium avium subsp. paratuberculosis isolates from cattle, sheep and goats by short sequence repeat and pulsed-field gel electrophoresis typing

        

multi-type farm?

Farm

Region

sp

Breed

SSR1_8 type

no. of isolates

Sna BI- Spe I PFGE type

no. of isolates

SSR

PFGE

BI5

BC

Bov

Holstein

8_4,9_5

1,2

{1-1}

3

yes

no

BI6

BC

Bov

Holstein

7_4,9_5,10_5,14_5

1,3,2,1

{1-1},{2-1}

6,1

yes

yes

SS5

BC

Bov

Holstein

8_5,11_5,13_5,14_5

1,1,3,1

{1-1},{54-49}

5,1

yes

yes

SS15

BC

Bov

Holstein

11_5,14_5

1,1

{1-1}

2

yes

no

SS20

BC

Bov

Holstein

7_4

3

{2-1},{2–19}

2,1

no

yes

SS23

BC

Bov

Holstein

7_4,14_5

10,1

{2-1},{54-49}

10,1

yes

yes

SS27

BC

Bov

Holstein

7_4,13_5

3,2

{1-1},{2-1},{59-63}

2,2,1

yes

yes

SS28

BC

Bov

Holstein

7_4,12_5

1,1

{2–19},{54-49}

1,1

yes

yes

SS38

BC

Bov

Holstein

13_5,14_5

1,1

{1-1}

2

yes

no

SS43

BC

Bov

Pyrenean

12_5,14_5

1,1

{1-1}

2

yes

no

SS45

BC

Bov

Limousin

7_4,14_5

1,1

{2-1},{54-49}

1,1

yes

yes

SS52

BC

Bov

Holstein

7_4,13_5,14_5

1,1,1

{1-1},{2-1}

2,1

yes

yes

S6

Can

Bov

Holstein

7_4,8_4

1,1

{2-1},{2–46}

1,1

yes

yes

BU3

CL

Bov

Holstein

7_4,8_4

2,2

{2-1}

4

yes

no

VA1

CL

Bov

Holstein

7_4

5

{2-1},{2–41}

4,1

no

yes

NA1

Na

Bov

Holstein

9_5,10_5

3,1

{1-1}

4

yes

no

NA2

Na

Bov

Holstein

13_5,14_5

4,9

{1-1},{1–53},{62-1}

11,1,1

yes

yes

O4

As

Bov

Holstein

7_4

3

{1-1},{2-1}

2,1

no

yes

SA2

CL

Bov

Bullfight

7_4,8_4

1,1

{2-1},{2–46}

1,1

yes

yes

Z2

Ar

Bov

Holstein

7_4,7_5,8_5,13_5,14_5

1,6,1,1,3

{1-1},{2-1},{53-1}

5,6,1

yes

yes

SS53

BC

Ov

Latxa

7_3,10_3,14_3

1,1,1

{61-47},{69-50},{69-54}

1,1,1

yes

yes

SS54

BC

Ov

Latxa

12_3,13_3,14_3

1,1,1

{67-51},{79-55},{69-50}

1,1,1

yes

yes

SS55

BC

Ov

Latxa

12_3,14_3

1,2

{61-47},{69-50},{71-64}

1,1,1

yes

yes

  1. Farms with more than one isolate giving at least two different strain types in SSR and/or PFGE typing. SSR detected 17 multi-type bovine herds and 3 multi-type sheep flocks. In the other hand, PFGE identified 14 and 3 multi-type farms, respectively. Farm names indicate the name of the province (within a region) they belong to: BI = Bizkaia (BC); SS = Gipuzkoa (BC); S = Cantabria (Can); BU = Burgos (CL); VA = Valladolid (CL); NA = Navarra (Na); O = Asturias (As); SA = Salamanca (CL); Z = Zaragoza (Ar). Other abbreviations: As = Asturias; BC = Basque Country; Can = Cantabria; CL = Castilla y León; Na = Navarra; Bov = bovine; Ov = ovine.