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Table 1 SSR1_SSR8 classification of Map strains.

From: Comparative analysis of Mycobacterium avium subsp. paratuberculosis isolates from cattle, sheep and goats by short sequence repeat and pulsed-field gel electrophoresis typing

Country

Region Code

SSR1_SSR8

Host sp

no. of isolates (%)

no. of farms (%)

IS1311 type

Spain

BC, As, CL, Cat, Can, An, Ga, Ar, Ma, Na, CM

7_4

Cattle

126 (54.31)

80 (61.07)

C type

 

BC, Ar, Na

7_5

Cattle

7 (3.02)

2 (1.53)

C type

 

BC, Ex, CL, Can, Ga

8_4

Cattle

17 (7.33)

14 (10.69)

C type

 

BC, Ar

8_5

Cattle

3 (1.29)

3 (2.29)

C type

 

BC, Na

9_5

Cattle

8 (3.45)

3 (2.29)

C type

 

BC

10_4

Cattle

1 (0.43)

1 (0.76)

C type

 

BC, Na

10_5

Cattle

4 (1.72)

3 (2.29)

C type

 

BC

11_4

Cattle

1 (0.39)

1 (0.76)

C type

 

BC

11_5

Cattle

5 (2.16)

5 (3.82)

C type

 

BC, Can, Cat

12_5

Cattle

7 (3.02)

7 (5.34)

C type

 

BC

13_4

Cattle

2 (0.86)

2 (1.53)

C type

 

As, BC, Na, Ar

13_5

Cattle

19 (8.19)

13 (9.92)

C type

 

BC, Na, Ar

14_5

Cattle

32 (13.79)

22 (16.79)

C type

 

BC, Ar, Na

7_3

Sheep

5 (29.41)

4 (40.0)

S type

 

Ar

7_4

Sheep

1 (5.88)

1 (10.0)

C type

 

BC

10_3

Sheep

1 (5.88)

1 (10.0)

S type

 

BC

12_3

Sheep

2 (11.76)

2 (20.0)

S type

 

BC

13_3

Sheep

3 (17.65)

3 (30.0)

S type

 

BC, Na

14_3

Sheep

5 (29.41)

4 (40.0)

S type

 

BC, An

7_4

Goat

3 (42.86)

2 (40.0)

C type

 

CL

9_3

Goat

1 (14.29)

1 (20.0)

S type

 

IB

14_3

Goat

3 (42.86)

3 (60.0)

S type

 

CM

7_4

Deer

1 (100.0)

1 (100.0)

C type

 

CM

7_4

Wild Boar

1 (100.0)

1 (100.0)

C type

India

Mathura

7_4

Sheep

2 (100.0)

1 (100.0)

B type

 

Farah

7_4

Goat

5 (100.0)

1 (100.0)

B type

USA

Montana

7_4

Bison

3 (100.0)

1 (100.0)

B type

  1. SSR types by region and host species. Name of SSR type: number of repeats in locus 1 (G residue) _ number of repeats in locus 8 (GGT residue). IS1311 PCR-REA classification of isolates is also included. Percentages in brackets are calculated according to the total number of isolates in each host species. Regions mentioned in the study are indicated as follows: An = Andalucia; Ar = Aragón; As = Asturias; BC = Basque Country; Can = Cantabria; Cat = Cataluña; CL = Castilla y León; CM = Castilla-La Mancha; Ex = Extremadura; Ga = Galicia; IB = Balearic Islands; Ma = Madrid; Na = Navarra.