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Table 3 PCR analysis of SMAG+ loci in S. maltophilia strains.

From: PCR-based rapid genotyping of Stenotrophomonas maltophiliaisolates

strains loci PCR Type
  II V I VII IX III VIII VI XII XI X IV  
OBGTC28 1 0 2 2 1 2 1 1a 1 0 0 0 PT-1
LMG959 1 0 2 2 0 1 0 1c 2 0 0 0  
1054 1 1 0 4 1 1 0 1c 1 1b 0 0 PT-2
OBG N1 1 1 0 3 1 5 1 1a 1 0 0 0 PT-3
1029 1 1 1 2 1 1 0 1b 1 1b 0 0 PT-4
1039 1 1 1 2 1 1 0 1b 1 1b 1 2  
616 1 1 2 2 0 0 0 0 0 0 0 0 PT-5
707 1 1 2 2 1 0 0 8 0 0 0 0  
LMG10879 1 1 3 2 0 1 0 0 0 0 17 0 PT-6
OBGTC22 2 0 0 0 0 0 0 0 0 0 4 0 PT-7
LMG10871 2 0 0 3 0 0 1 2 0 0 0 0 PT-8
92 2 0 4 2 1 1 1 1a 1 2 0 2 PT-9
549 2 1 0 2 1 0 0 1c 1 0 0 0 PT-10
598 2 1 0 2 2 6 1 4 4 1a 4 2  
OBGTC23 2 1 0 2 1 2 1 1a 1 2 0 0  
STM2 2 1 2 2 1 1 1 2 1 1a 4 0 PT-11
OBGTC75 2 1 3 1 4 2 1 1b 1 4 0 2 PT-12
OBGTC13 2 1 4 2 1 2 1 1a 1 2 4 0 PT-13
OBGTC30 2 1 4 2 1 2 1 1a 0 0 0 0  
916 2 3 3 2 1 1 4 8 2 4 1 2 PT-14
1019 2 3 3 2 1 1 4 8 2 4 1 2  
1053 2 3 3 2 1 1 4 8 2 4 1 2  
527 2 3 7 4 4 1 3 1a 4 4 4 4 PT-15
OBGTC29 2 4 7 1 2 2 4 3 4 3 15 2 PT-16
714 2 4 7 2 2 3 4 6 2 4 5 3 PT-17
545 2 4 7 3 2 2 4 3 3a 3 15 2 PT-18
262 2 4 7 4 2 3 4 6 2 4 5 3 PT-19
915 2 4 7 4 2 3 4 1a 2 3 5 4  
K279a 2 4 7 4 4 3 4 4 3b 4 3 4  
OBGTC9 2 4 7 4 4 3 4 4 3b 4 3 4  
OBGTC10 2 4 7 4 4 3 4 4 3b 4 3 4  
OBGTC20 2 4 7 4 4 3 4 1a 4 4 3 2  
OBGTC26 2 4 7 4 2 1 4 6 2 4 5 4  
528 2 5 3 3 4 2 4 5 5 1a 5 4 PT-20
571 2 5 3 3 4 2 4 5 5 1a 5 4  
OBGTC16 2 5 5 4 5 3 3 7 3a 3 4 4 PT-21
OBGTC3 2 5 10 2 5 3 3 9 3a 3 4 3 PT-22
OBGTC45 2 5 10 4 5 0 3 9 3a 0 15 5 PT-23
  1. The PCR products derived from the amplification of loci I to XII in the listed strains are labeled with the number of SMAG repeats present. The letters a, b and c denote length differences among amplimers assigned to the same class. The lack of amplification is labeled by zero. PCR types (PTs) are defined by the 4-digit code resulting from analyses of loci II, V, I and VII (bold numbers). Strains with the same PT are boxed.