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Table 3 PCR analysis of SMAG+ loci in S. maltophilia strains.

From: PCR-based rapid genotyping of Stenotrophomonas maltophiliaisolates

strains

loci

PCR Type

 

II

V

I

VII

IX

III

VIII

VI

XII

XI

X

IV

 

OBGTC28

1

0

2

2

1

2

1

1a

1

0

0

0

PT-1

LMG959

1

0

2

2

0

1

0

1c

2

0

0

0

 

1054

1

1

0

4

1

1

0

1c

1

1b

0

0

PT-2

OBG N1

1

1

0

3

1

5

1

1a

1

0

0

0

PT-3

1029

1

1

1

2

1

1

0

1b

1

1b

0

0

PT-4

1039

1

1

1

2

1

1

0

1b

1

1b

1

2

 

616

1

1

2

2

0

0

0

0

0

0

0

0

PT-5

707

1

1

2

2

1

0

0

8

0

0

0

0

 

LMG10879

1

1

3

2

0

1

0

0

0

0

17

0

PT-6

OBGTC22

2

0

0

0

0

0

0

0

0

0

4

0

PT-7

LMG10871

2

0

0

3

0

0

1

2

0

0

0

0

PT-8

92

2

0

4

2

1

1

1

1a

1

2

0

2

PT-9

549

2

1

0

2

1

0

0

1c

1

0

0

0

PT-10

598

2

1

0

2

2

6

1

4

4

1a

4

2

 

OBGTC23

2

1

0

2

1

2

1

1a

1

2

0

0

 

STM2

2

1

2

2

1

1

1

2

1

1a

4

0

PT-11

OBGTC75

2

1

3

1

4

2

1

1b

1

4

0

2

PT-12

OBGTC13

2

1

4

2

1

2

1

1a

1

2

4

0

PT-13

OBGTC30

2

1

4

2

1

2

1

1a

0

0

0

0

 

916

2

3

3

2

1

1

4

8

2

4

1

2

PT-14

1019

2

3

3

2

1

1

4

8

2

4

1

2

 

1053

2

3

3

2

1

1

4

8

2

4

1

2

 

527

2

3

7

4

4

1

3

1a

4

4

4

4

PT-15

OBGTC29

2

4

7

1

2

2

4

3

4

3

15

2

PT-16

714

2

4

7

2

2

3

4

6

2

4

5

3

PT-17

545

2

4

7

3

2

2

4

3

3a

3

15

2

PT-18

262

2

4

7

4

2

3

4

6

2

4

5

3

PT-19

915

2

4

7

4

2

3

4

1a

2

3

5

4

 

K279a

2

4

7

4

4

3

4

4

3b

4

3

4

 

OBGTC9

2

4

7

4

4

3

4

4

3b

4

3

4

 

OBGTC10

2

4

7

4

4

3

4

4

3b

4

3

4

 

OBGTC20

2

4

7

4

4

3

4

1a

4

4

3

2

 

OBGTC26

2

4

7

4

2

1

4

6

2

4

5

4

 

528

2

5

3

3

4

2

4

5

5

1a

5

4

PT-20

571

2

5

3

3

4

2

4

5

5

1a

5

4

 

OBGTC16

2

5

5

4

5

3

3

7

3a

3

4

4

PT-21

OBGTC3

2

5

10

2

5

3

3

9

3a

3

4

3

PT-22

OBGTC45

2

5

10

4

5

0

3

9

3a

0

15

5

PT-23

  1. The PCR products derived from the amplification of loci I to XII in the listed strains are labeled with the number of SMAG repeats present. The letters a, b and c denote length differences among amplimers assigned to the same class. The lack of amplification is labeled by zero. PCR types (PTs) are defined by the 4-digit code resulting from analyses of loci II, V, I and VII (bold numbers). Strains with the same PT are boxed.