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Table 2 Loci analyzed by PCR in S. maltophilia strains

From: PCR-based rapid genotyping of Stenotrophomonas maltophiliaisolates

locus

coordinates

PCR primers

Ta

I

0078153–0078502

f [0077906] CACCGCCGAGTGCGATGCCGATCTT

69°C

  

r [0078751] ACCCGACCGTGGACATGGACGTGCG

 

II

0458218–0458270

f [0458122] GACGTGAAGTGGCTGCGCCTGAAGC

65°C

  

r [0458343] CGTTCCAGCCACTGTACCGCCACCA

 

III

0898001–0898182

f [0897802] GTGGTGGTGATCAAGCGCGGCAAGG

68°C

  

r [0898549] GGCAGGTCGGCTGGATGGCGGTACT

 

IV

1260576–1260695

f [1260393] CAGGAACGATGTGCGGGCAGTGACC

66°C

  

r [1260806] CTGTCCGAAACACATGGCGTGGCAG

 

V

1397805–1398345

f [1397652] TGATCGGCATCATCGTGGTCGGTAC

65°C

  

r [1398470] GCGAGTACCTGAGCGAACTGGGGTG

 

VI

2363422–2363811

f [2363314] CAGCATCATCAACAAGCACCATGGC

65°C

  

r [2363972] TATCGCTTCCTGACCAAACCGTGGA

 

VII

2877734–2877879

f [2877624] GCCGCTGGTCTGGCCGTTGATGATG

65°C

  

r [2877987] GCTGGAGCTGCACCTGAGCGCCTGG

 

VIII

2893713–2894397

f [2893497] TGGACCGCCACCGACTACCTGATGG

67°C

  

r [2894486] CACCACCACCACCGAGGTCTACCCG

 

IX

3626782–3627370

f [3626652] CGAGTACTTCACCCCGGTCAACGAG

65°C

  

r [3627448] AGGGCCAGACCTTCGAGGAATTCAA

 

X

3842432–3842620

f [3842338] TGGTGGTCAATGATGGGCAGCCGGA

66°C

  

r [3842731] CCGCCACGATGACTGGTCTCAGCCG

 

XI

4475729–4476245

f [4475549] CACAGGTCACACAGCGTGGTGTACG

65°C

  

r [4476369] GGTTGTTCGGCATCGGTTTGATCAT

 

XII

4528877–4529176

f [4528752] CGCCATCCAGCCGTCCTGTACTGCT

66°C

  

r [4529342] GGCGGGTTGGGTGGGTACTACCTGG

 
  1. The coordinates of the loci on the genome of the K279a strain, the forward (f) and reverse (r) primers in the 5'-3' orientation, their 5' end position, and the annealing temperatures (Ta) are shown.