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Table 2 Sequence type distribution (ST) of S. pneumoniae isolates used in this study

From: Seasonality and outbreak of a predominant Streptococcus pneumoniaeserotype 1 clone from The Gambia: Expansion of ST217 hypervirulent clonal complex in West Africa

    

Allele profiles

  

No of isolates

Total no. of Isolates

ST

aroE

gdh

gki

recP

spi

xpt

ddl

Carriage

Invasive

 

ST217

10

18

4

1

7

19

9

1

5

6

ST612

10

18

4

1

7

19

31

1

3

4

ST 618

13

8

4

1

7

19

14

22

93

115

ST1331

13

8

4

1

7

19

9

1

1

2

ST2084

13

8

4

2

7

19

14

2

2

4

ST3570

7

18

4

1

7

19

31

1

0

1

ST3571

7

13

101

4

36

1

74

1

0

1

ST3574

13

8

4

1

7

19

19

2

0

2

ST3572

7

2

4

4

7

17

19

1

0

1

ST3573

13

8

4

15

7

19

14

0

1

1

ST3574

13

8

4

1

7

19

19

0

1

1

ST3575

10

191

4

1

7

19

9

0

12

12

ST1336

13

8

4

1

7

19

161

0

1

1

ST3576

5

17

4

4

6

1

17

0

1

1

ST3577

10

8

4

1

7

19

14

0

1

1

ST3578

1

8

193

5

6

58

8

0

1

1

ST3579

13

8

4

5

7

250

14

0

2

2

ST3580

10

13

53

1

72

19

31

0

1

1

ST3581

13

8

4

115

7

19

14

0

2

2

ST3582

12

43

194

1

181

49

31

1

0

1

ST3407

23

189

4

12

43

4

74

1

0

1

ST3583

2

20

4

38

27

88

6

1

0

1

ST3329

7

13

4

8

6

20

18

1

0

1

Total

       

36 (100)

127 (100)

163

  1. Novel alleles are underlined.