Table 5 Identities of variable region V3 DGGE bands picked and sequenced from the gel in Figure 6B
DGGE band number | Closest relative (if known) | Origin and accession number | Sequence homology (%) |
|---|---|---|---|
1 | Barnesiella intestinihominis | Human faeces [GenBank:AB370251] | 100 |
2 | Uncultured bacterial clone | Adult human faeces [GenBank:AY983922] | 100 |
3 | Bacteroides dorei | Human faeces [GenBank:AB242142] | 100 |
4 | Uncultured Bacteroides clone | Human faeces [GenBank:EU381174] | 100 |
5 | Bacteroides fragilis | No origin given [GenBank:CR626927] | 100 |
6 | Desulfovibrio spp. | No origin given [GenBank:U60095] | 100 |
7 | Uncultured bacterium clone | Human faeces [GenBank:DQ800759] | 100 |
8 | Uncultured faecal bacterium clone | Adult with Crohn's disease [GenBank:AY471705] | 100 |
9 | Uncultured bacterium clone | Human adult faecal sample [GenBank:AY985184] | 100 |
10 | Bacteroides vulgatus | Human large intestine [GenBank:AY978412] | 99 |
11 | Uncultured Bacteroides spp. | Human faeces [GenBank:DQ808592] | 100 |
12 | Bacteroides eggerthii | Human intestine [GenBank:AB050107] | 100 |
13 | Uncultured bacterial clone | Activated sludge in circulation flush toilet [GenBank:AB196029] | 95 |
14 | Prevotella spp. | Human oral clone [GenBank:AY005054] | 92 |
15 | Uncultured bacterial clone | Human faeces [GenBank:AY343236] | 97 |
16 | Bacteroides uniformis | Human faeces [GenBank:AB247142] | 100 |
17 | Bacteroides eggerthii | Human faeces [GenBank:AB050107] | 100 |