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Table 3 Summary of consistent amino acid change among the five DENV-2 genotype viruses.

From: Specific genetic markers for detecting subtypes of dengue virus serotype-2 in isolates from the states of Oaxaca and Veracruz, Mexico

PROTEIN     AMINO ACID POSITIONSA
    DOMAIN MTase RdRp Helicase †
NS5     026 155 179 192   748 762 784 799 810 818 835 864    
NS3                  187 249 250
STRAIN/YEAR ACCESSION GENBANK DIAGNOSIS GENOTYPE                 
Tonga/74 AY744147 DF AMERICAN I V V R   R S S S T L I T R R A
S1 vaccine/USA/93 M19197 NA AMERICAN I V V R   R S S S T L I T R R A
131/MEX/92 AF100469 DF AMERICAN I V V R   R S S S T L I T R R A
Ven2/87 AF100465 DF AMERICAN I V V R   R S S S T L I T R R A
I348600/COL/86 AY702040 DF AMERICAN I V V R   R S S S T L I T R R A
OAX/MEX/S707/05§ EF595821 DF ASIAN/AMERICAN - - - -   K T P K A Q V T K K T
OAX/MEXS1038/05§ EF595817/EF595825 DF ASIAN/AMERICAN V I I K   K T P K A Q V T K K T
OAX/MEXS1656/05§ EF595815/EF595820 DF ASIAN/AMERICAN V I I K   K T P K A Q V T K K T
OAX/MEXS739/05§ EF595818/EF595822 DF ASIAN/AMERICAN V I I K   K T P K A Q V T K K T
OAX/MEXS1020/06§ EF595816/EF595824 DHF ASIAN/AMERICAN V I I K   K T P K A Q V T K K T
OAX/MEXS1733/06§ EF595819/EF595823 DF ASIAN/AMERICAN V I I K   K T P K A Q V T K K T
VER/MEX024A/06§ EU570975/EU570983 DHF ASIAN/AMERICAN V I I K   K T P K A Q V T - - -
VER/MEX013A/06§ EU570980/EU570982 DHF ASIAN/AMERICAN V I I K   K T P K A Q V T - - -
Cuba13/97 AY702034 DF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
Cuba115/97 AY702036 DF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
Cuba205/97 AY702039 DSS ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
Cuba165/97 AY702038 DHF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
Cuba58/97 AY702035 DF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
Cuba89/97 AY702037 DHF/DSS ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
MART/98-703/98 AF208496 DF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
DR23/01 AB122020 DF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
DR31/01 AB122021 DF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
DR59/01 AB122022 DHF ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
BR64022/02 AF489932 NA ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
Mara 4&/Ven/90 AF100466 DHF ASIAN/AMERICAN I I I K   K T S K A Q I T K R A
Jamaica/N.1409/83 M20558 NA ASIAN/AMERICAN I I I K   K T S K A Q V T K R A
China 04/85 AF119661 DHF ASIAN/AMERICAN I I I K   K S S K T Q V T K R T
Bangkok 1974 AJ487271 NA ASIAN 1 I V I K   R T S K T Q I A R R A
CO390/Th/99 AF100462 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
16681/USA/97 U87411 NA ASIAN 1 I V I K   R S S K T Q I A R R A
PDK53/USA/97 U87412 NA ASIAN 1 I V I K   R S S K T Q I A R R A
16681-PDK53/97 U87411 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-p11/93 AF022437 DF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-p12/93 AF022438 DF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-p14/93 AF022439 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-7/93 AF022434 DSS ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-28/93 AF022435 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-52/93 AF022436 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-p16/93 AF022440 DF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH-p36/93 AF022441 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH29/93 AF169678 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH36/93 AF169679 DF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH45/93 AF169680 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH55/93 AF169681 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH54/93 AF169682 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH62/93 AF169683 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH63/93 AF169684 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH69/93 AF169685 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH73/93 AF169686 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH76/93 AF169687 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
ThNH81/93 AF169688 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
K0008/Th/99 AF100459 DHF ASIAN 1 I V I K   R S S K T Q I A R R A
K0010/Th/99 AF100460 DF ASIAN 1 I V I K   R S S K T Q I A R R A
C0371/Th/99 AF100461 DF ASIAN 1 I V I K   R S S K T Q I A R R A
C0166/Th/99 AF100463 DF ASIAN 1 I V I K   R S S K T Q I A R R A
New Guinea C/44 D00346 DHF ASIAN 2 I V I K   R S S K T Q I T R R A
43/China/89 AF204178 DF ASIAN 2 I V I K   R S S K T Q I T R R A
44/China/87 AF204177 DF ASIAN 2 I V I K   R S S K T Q I T R R A
BA05i/Indon/05 AY858035 DF COSMOPOLITAN I V I K   R S S T T Q I T K R A
TSV01/Austra/93 AY037116 NA COSMOPOLITAN I V I K   R S S T T Q I T K R A
98900666/Indo/04 AB189124 DSS COSMOPOLITAN I V I K   R S S T T Q I T K R A
FJ-10/China/00 AF276619 NA COSMOPOLITAN I V I K   R S S R T Q I T K R A
  1. &Amino acid sequence was numbered starting from protein NS5 or NS3 to the end of the last codon sequenced.
  2. *Recombinant strain [16].
  3. NS3 Accession number for Oaxaca isolates: EF591287–EF591293.
  4. §Accession numbers for SAM/RdRp Domains