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Table 3 Summary of consistent amino acid change among the five DENV-2 genotype viruses.

From: Specific genetic markers for detecting subtypes of dengue virus serotype-2 in isolates from the states of Oaxaca and Veracruz, Mexico

PROTEIN

   

AMINO ACID POSITIONSA

   

DOMAIN

MTase

RdRp

Helicase †

NS5

   

026

155

179

192

 

748

762

784

799

810

818

835

864

   

NS3

                

187

249

250

STRAIN/YEAR

ACCESSION GENBANK

DIAGNOSIS

GENOTYPE

                

Tonga/74

AY744147

DF

AMERICAN

I

V

V

R

 

R

S

S

S

T

L

I

T

R

R

A

S1 vaccine/USA/93

M19197

NA

AMERICAN

I

V

V

R

 

R

S

S

S

T

L

I

T

R

R

A

131/MEX/92

AF100469

DF

AMERICAN

I

V

V

R

 

R

S

S

S

T

L

I

T

R

R

A

Ven2/87

AF100465

DF

AMERICAN

I

V

V

R

 

R

S

S

S

T

L

I

T

R

R

A

I348600/COL/86

AY702040

DF

AMERICAN

I

V

V

R

 

R

S

S

S

T

L

I

T

R

R

A

OAX/MEX/S707/05§

EF595821

DF

ASIAN/AMERICAN

-

-

-

-

 

K

T

P

K

A

Q

V

T

K

K

T

OAX/MEXS1038/05§

EF595817/EF595825

DF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

K

K

T

OAX/MEXS1656/05§

EF595815/EF595820

DF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

K

K

T

OAX/MEXS739/05§

EF595818/EF595822

DF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

K

K

T

OAX/MEXS1020/06§

EF595816/EF595824

DHF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

K

K

T

OAX/MEXS1733/06§

EF595819/EF595823

DF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

K

K

T

VER/MEX024A/06§

EU570975/EU570983

DHF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

-

-

-

VER/MEX013A/06§

EU570980/EU570982

DHF

ASIAN/AMERICAN

V

I

I

K

 

K

T

P

K

A

Q

V

T

-

-

-

Cuba13/97

AY702034

DF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

Cuba115/97

AY702036

DF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

Cuba205/97

AY702039

DSS

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

Cuba165/97

AY702038

DHF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

Cuba58/97

AY702035

DF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

Cuba89/97

AY702037

DHF/DSS

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

MART/98-703/98

AF208496

DF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

DR23/01

AB122020

DF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

DR31/01

AB122021

DF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

DR59/01

AB122022

DHF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

BR64022/02

AF489932

NA

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

Mara 4&/Ven/90

AF100466

DHF

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

I

T

K

R

A

Jamaica/N.1409/83

M20558

NA

ASIAN/AMERICAN

I

I

I

K

 

K

T

S

K

A

Q

V

T

K

R

A

China 04/85

AF119661

DHF

ASIAN/AMERICAN

I

I

I

K

 

K

S

S

K

T

Q

V

T

K

R

T

Bangkok 1974

AJ487271

NA

ASIAN 1

I

V

I

K

 

R

T

S

K

T

Q

I

A

R

R

A

CO390/Th/99

AF100462

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

16681/USA/97

U87411

NA

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

PDK53/USA/97

U87412

NA

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

16681-PDK53/97

U87411

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-p11/93

AF022437

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-p12/93

AF022438

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-p14/93

AF022439

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-7/93

AF022434

DSS

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-28/93

AF022435

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-52/93

AF022436

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-p16/93

AF022440

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH-p36/93

AF022441

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH29/93

AF169678

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH36/93

AF169679

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH45/93

AF169680

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH55/93

AF169681

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH54/93

AF169682

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH62/93

AF169683

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH63/93

AF169684

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH69/93

AF169685

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH73/93

AF169686

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH76/93

AF169687

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

ThNH81/93

AF169688

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

K0008/Th/99

AF100459

DHF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

K0010/Th/99

AF100460

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

C0371/Th/99

AF100461

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

C0166/Th/99

AF100463

DF

ASIAN 1

I

V

I

K

 

R

S

S

K

T

Q

I

A

R

R

A

New Guinea C/44

D00346

DHF

ASIAN 2

I

V

I

K

 

R

S

S

K

T

Q

I

T

R

R

A

43/China/89

AF204178

DF

ASIAN 2

I

V

I

K

 

R

S

S

K

T

Q

I

T

R

R

A

44/China/87

AF204177

DF

ASIAN 2

I

V

I

K

 

R

S

S

K

T

Q

I

T

R

R

A

BA05i/Indon/05

AY858035

DF

COSMOPOLITAN

I

V

I

K

 

R

S

S

T

T

Q

I

T

K

R

A

TSV01/Austra/93

AY037116

NA

COSMOPOLITAN

I

V

I

K

 

R

S

S

T

T

Q

I

T

K

R

A

98900666/Indo/04

AB189124

DSS

COSMOPOLITAN

I

V

I

K

 

R

S

S

T

T

Q

I

T

K

R

A

FJ-10/China/00

AF276619

NA

COSMOPOLITAN

I

V

I

K

 

R

S

S

R

T

Q

I

T

K

R

A

  1. &Amino acid sequence was numbered starting from protein NS5 or NS3 to the end of the last codon sequenced.
  2. *Recombinant strain [16].
  3. †NS3 Accession number for Oaxaca isolates: EF591287–EF591293.
  4. §Accession numbers for SAM/RdRp Domains