Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus

BMC Microbiology

Table 1 Chromosomal regions unique to V. parahaemolyticus strains RIMD2210633 and AQ3810

ORFs	Region type	Size	% GC	Int	AQ3810	Reference
Chromosome I
VP0081 – VP0092	NK	10	48	-	Present	This study
VP0218 – VP0234	LPS	46	40	-	Present	This study
VP0380 – VP0403	VPaI-1	24	42	Int	Absent	[26]
VP0634 – VP0643	VPaI-2	10	45	Int	Absent	[26]
VP1071 – VP1095	VPaI-3	32	42	Int	Partial	[26]
VP1386 – VP1420	T6SS	57	43	-	Absent	This study
VP1549 – VP1590	phage f237	25	46	Int	Absent	[33]
VP1658 – VP1702	T3SS-1	35	47	-	Present	[26]
VP1719 – VP1728	Osmotolerance	12	46	-	Present	[47]
VP1787 – VP1865	Integron class-1	48	40	Int	Absent	This study
VP2131 – VP2144	VPaI-4	17	39	Int	Absent	[26]
VP2900 – VP2910	VPaI-5	12	38	Int	Absent	[26]
Chromosome II
VPA0434 – VPA0458	Degradative	29	46	Int	Partial	This study
VPA0887 – VPA0914	phage f237-like	16	47	Int	Present	This study
VPA0950 – VPA0962	Biofilm	22	47		Present	This study
VPA0989 – VPA0999	Gametolysin	18	45		Present	This study
VPA1102 – VPA1115	Osmotolerance	17	46		Present	[47]
VPA1253 – VPA1270	VPaI-6	27	43	Int	Absent	[26]
VPA1312 – VPA1395	VPaI-7 (T3SS-2)	81	39	Tnp	Present	[26]
VPA1403 – VPA1412	CPS	13	47		Present	This study
VPA1440 – VPA1444	Type I secretion	20	47		Present	This study
VPA1503 – VPA1521	Type I pilus	20	45		Present	This study
VPA1559 – VPA1583	Multidrug efflux	22	46		Present	This study
VPA1652 – VPA1679	Ferric uptake	25	50		Present	This study

ISSN: 1471-2180