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Table 2 Genes differentially expressed upon infection with PAO1 and PA14 versus Klebsiella

From: Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains

Cell proliferation

   

Gene ID

Gene function and name

Log 2 ratio: PAO1-C

PA14-C

DDB0216882

Cyclin-dependent kinase regulatory

-0,89

-0,97

DDB0188449

cdc40, conserved splicing factor

0,68

0,78

DDB0205486

CDK family protein kinase

0,81

0,89

DDB0168249

cdk1, "cyclin-dependent_kinase, p34-cdc2_protein"

-0,78

-0,83

DDB0216532

cdk10;"putative_CDK_family_protein_kinase

0,91

1,08

DDB0185341

PP-loop family

-0,60

-0,70

DDB0205486

putative protein serine/threonine kinase, CDK family protein kinase

0,68

0,64

DDB0218360

PhoPQ-activated pathogenicity-related protein

-0,59

-0,57

Cellular biogenesis and organization

  

DDB0189693

copA, coatomer protein complex alpha subunit

0,52

0,68

DDB0216892

lvsB;"BEACH_domain-containing_protein"

1,05

0,91

DDB0202609

Transport protein particle (TRAPP)

-0,77

-0,61

DDB0187558

putative mitochondrial import inner membrane translocase

-0,65

-0,65

DDB0186481

atg9, APG9, "autophagy_protein_9"

-0,88

-0,77

DDB0217942

Putative Mpv17/PMP22 family

-0,66

-0,93

Energy

  

DDB0217090

Isocitrate lyase family

-0,80

-0,84

DDB0192001

ppkA, "poly_P_kinase, polyphosphate_kinase"

-0,65

-0,51

DDB0190821

sdhB, complex II, iron-sulfur protein (IP) subunit

0,74

0,53

DDB0190821

sdhB;"complex_II,(ubiquinone), succinic_dehydrogenase"

0,59

0,61

DDB0167662

similar to Coenzyme Q9

-0,71

-0,72

DDB0204006

AMPK beta-2 chain

0,52

0,73

Metabolism

  

DDB0187528

cysteine dioxygenase

0,69

0,66

DDB0185702

hgd;"homogentisate_1,2-dioxygenase"

1,05

1,10

DDB0184361

Thiamine pyrophosphate enzyme

-0,57

-0,88

DDB0186120

gshA, "gamma_glutamylcysteine_synthetase, glutamate-cysteine_ligase"

-1,72

-0,94

DDB0167249

Aldehyde dehydrogenase

-0,77

-0,94

DDB0192169

alrA;"aldehyde_reductase, aldo-keto_reductase"

-0,54

-0,88

DDB0218652

alrB;"aldo-keto_reductase"

-0,60

-0,69

DDB0189745

alrC;"aldo-keto_reductase"

-0,84

-0,72

DDB0186332

alrE;"aldo-keto_reductase"

-1,23

-0,99

DDB0204015

D-Lactate dehydrogenase

0,92

0,65

DDB0187572

Endoglucanase_E_like

0,64

0,78

DDB0203268

glgB;"1,4-alpha-glucan_branching_enzyme, branching_enzyme"

1,02

0,85

DDB0187562

glk;glucokinase

0,69

0,56

DDB0217973

Gluconolactonase

0,85

0,82

DDB0202855

Glycoside hydrolase

-1,63

-1,45

DDB0202233

Glycosyl hydrolase family 7

-1,26

-1,38

DDB0167594

Glycosyl hydrolases family

0,60

0,56

DDB0204016

gpt10;"putative_glycophosphotransferase"

-0,69

-1,11

DDB0204037

Legume lectins beta-chain signature

-0,86

-1,16

DDB0206405

Mannosyl oligosaccharide glucosidase

-0,80

-0,68

DDB0205896

NAD-dependent epimerase/dehydratase family protein

-2,12

-1,73

DDB0204752

Phosphoglycerate mutase family

0,64

0,61

DDB0190464

Predicted kinase related to galactokinase and mevalonate kinase

0,52

1,02

DDB0186919

zinc-containing alcohol dehydrogenase

-2,09

-1,99

DDB0168737

zinc-containing alcohol dehydrogenase (ADH)

-1,35

-1,03

DDB0169356

carboxylic ester hydrolase

-1,03

-0,72

DDB0190523

CAS1;"cycloartenol_synthase"

0,85

0,88

DDB0185601

cutA;"fatty_acid_elongase_3-ketoacyl-CoA_synthase, long_chain_fatty_acid_elongase"

-0,93

-0,62

DDB0188166

delta-24-sterol methyltransferase

-1,42

-1,74

DDB0186908

eapA;"alkyl-dihydroxyacetonephosphate_synthase"

0,72

0,81

DDB0187604

enoyl-CoA hydratase/isomerase domain-containing protei

-0,65

-0,63

DDB0205302

Enoyl-CoA hydratase/isomerase family

-0,64

-0,68

DDB0205157

fadB, des5-2, "delta_5_fatty_acid_desaturase"

0,89

1,11

DDB0190288

fcsB, fatty acyl-CoA synthetase, long-chain-fatty-acid-CoA ligase

-1,45

-1,57

DDB0191679

GNS1/SUR4 family

-1,03

-0,59

DDB0205505

mfeB;"hypothetical_peroxisomal_multifunctional_enzyme_2"

-1,06

-0,65

DDB0191653

patatin family protein

-2,07

-1,77

DDB0218187

Perilipin family

-1,35

-1,04

DDB0184443

Saposin (B) Domains

0,59

0,59

DDB0190553

Similar to sterol-C4-methyl oxidase-like

-0,71

-0,91

DDB0217332

stearoyl-CoA desaturase

0,90

1,02

DDB0206478

allC;"allantoate_amidinohydrolase, allantoicase"

-1,12

-1,25

DDB0205700

cysteine desulfurase

-1,31

-1,26

DDB0169540

MOSC domain

-1,00

-0,67

DDB0187599

5 prime nucleotidase family

-0,90

-0,70

DDB0187063

3-methyl-2-oxobutanoate hydroxymethyltransferase

-1,83

-1,41

DDB0190860

adenine phosphoribosyltransferase

-0,98

-0,75

DDB0203073

adenosine deaminase-related growth factor

-1,35

-0,74

DDB0215237

ATP:D-ribose_5-phosphotransferase, ribokinase

-0,56

-0,51

DDB0206047

CTP synthase

-1,01

-1,20

DDB0187738

Cytidine and deoxycytidylate deaminase zinc-binding region

-0,76

-0,73

DDB0191911

putative RNA methylase

-1,01

-1,21

DDB0185785

Putative RNA methylase family

-0,59

-0,63

DDB0219236

pyrK, cytidylate kinase

-0,98

-0,71

DDB0217423

rnrB_2, ribonucleotide reductase small subunit

-0,79

-0,84

DDB0215284

tRNA/rRNA methyltransferase SpoU family protein

-0,77

-0,93

DDB0186269

Thioredoxin family

-1,41

-1,91

DDB0206431

FAD binding domain

-1,63

-1,13

DDB0187958

gchA, "GTP_cyclohydrolase_I"

-0,91

-0,89

DDB0185963

Oxysterol-binding protein

-0,55

-0,75

DDB0205608

pks18, putative polyketide synthase

0,54

0,60

DDB0168380

pks5, putative polyketide synthase

0,57

0,99

DDB0219613

stlB, putative polyketide synthase

0,68

1,05

DDB0186173

Histidine acid phosphatase

-0,79

-0,80

DDB0184156

Acetyltransferase (GNAT) family

0,81

0,78

DDB0205937

Aldehyde dehydrogenase family

1,02

0,81

DDB0183800

dihydrolipoamide_dehydrogenase

-0,60

-0,57

DDB0188526

FAD binding domain

-1,14

-0,93

DDB0169374

haloacid dehalogenase-like hydrolase

-1,26

-1,45

DDB0204714

hemA, ALAS, "5-aminolevulinate_synthase, ALA_synthase"

1,00

0,99

DDB0187575

monooxygenase, FAD-binding

-1,30

-1,14

DDB0203608

NADH:flavin oxidoreductase/NADH oxidase domain-containing protein

-2,99

-2,49

DDB0186877

Predicted hydrolases or acyltransferases

-0,70

-0,83

DDB0203708

Putative dehydrogenase domain

0,60

0,66

DDB0186921

Putative quinone oxidoreductase

-0,68

-0,80

DDB0218378

selD, selenophosphate synthase

0,83

0,85

DDB0219578

short chain dehydrogenase

-0,56

-0,76

DDB0168766

short chain dehydrogenase

0,75

0,90

DDB0201995

Short-chain alcohol dehydrogenase

-0,64

-0,69

DDB0191047

Sucrolytic enzyme/ferredoxin homolog protei

-0,76

-0,55

DDB0205223

Ubiquinone biosynthesis protein

1,02

0,99

Movement

  

DDB0190345

Actin

-0,62

-0,64

DDB0216677

tubB;"beta_tubulin"

0,78

0,66

Protein targeting

  

DDB0189280

CLN3 protein;Major Facilitator Superfamily

-1,38

-0,81

DDB0186130

pigF, phosphatidylinositol glycan, class Fphosphoethanolamine N- methyltransferase family

-1,13

-1,33

DDB0187271

Protein prenyltransferase, alpha subunit

-0,69

-0,66

DDB0187195

Ubiquitin family protein

-0,68

-0,56

DDB0217546

vps13B, vacuolar protein sorting-associated protein

0,80

0,57

DDB0205767

Importin-beta N-terminal domain

-1,39

-0,91

DDB0219696

CSN3, COP9 signalosome complex subunit 3

0,86

0,56

DDB0188097

mppB;"mitochondrial_processing_peptidase_beta_subunit"

0,85

0,93

DDB0188792

npl4, nuclear protein localization 4

-1,46

-1,26

DDB0189322

Peptidase family M41

0,66

0,82

DDB0204548

putative E3 ubiquitin ligase

0,56

0,88

DDB0203213

Putative serine protease

0,57

0,64

DDB0190305

RING-finger-containing ubiquitin ligase

-1,71

-2,23

DDB0191910

sigB, GP63, orfGP63", "leishmanolysin_family_protein, peptidase

-1,44

-1,19

DDB0219558

usp12, putative ubiquitin carboxyl-terminal hydrolase (UCH)

0,81

0,50

DDB0188490

usp40, putative ubiquitin carboxyl-terminal hydrolase (UCH)

0,83

0,60

Signal transduction

  

DDB0167328

ArfGAP, Arf GTPase activating protein

0,58

0,67

DDB0187828

gacX, RacGAP

0,62

0,52

DDB0217797

gpaG, "G-protein_subunit_alpha_7"

-0,93

-0,77

DDB0205484

GTPase-activator protein for Ras-like

0,58

0,69

DDB0202545

rabX;"Rab_GTPase"

-0,59

-0,76

DDB0186244

abkD, AdckB2, "putative_ABC1_family_protein_kinase"

0,80

0,88

DDB0217600

nek3, putative protein serine/threonine kinase

0,55

0,56

DDB0203684

tyrosine kinase-like

0,53

0,56

DDB0189806

vwkA;"protein_serine/threonine_kinase"

-0,77

-0,67

DDB0205355

Calcineurin-like phosphoesterase

-1,27

-0,86

DDB0218779

pdsA, "PDE, pde1, pdeA", "cAMP_phosphodiesterase"

0,79

1,40

DDB0204820

rabS;"Rab_GTPase"

-0,80

-0,87

DDB0190872

NLI interacting factor-like phosphatase

-0,55

-0,60

DDB0185382

Protein phosphatase 5, catalytic subunit

-0,68

-0,62

DDB0186390

protein tyrosine phosphatase

-0,85

-0,74

DDB0218065

ptpB, DdPTPa, "phosphotyrosine_phosphatase_ptp2

-1,20

-1,01

DDB0189698

Tyrosine specific protein phosphatases family

-0,76

-0,89

DDB0203756

G-protein-coupled receptor (GPCR) family protein

0,69

0,99

DDB0189216

gacD, RacGAP

-0,63

-0,58

DDB0217433

Regulator of G protein signaling

0,90

0,72

DDB0169375

cGMP-specific phosphodiesterase

-0,83

-0,79

DDB0167494

plbF, PLB, "phospholipase_B-like"

-1,17

-1,01

DDB0168860

sgkA, "SK, SPHK", "sphingosine_kinase"

-0,97

-0,79

DDB0167227

Cytochrome b5-like Heme/Steroid binding domain

-0,71

-1,57

DDB0216720

Tetraspanin family

-0,73

-0,68

Stress response

  

DDB0202483

AhpC/TSA family

-0,51

-0,68

DDB0203727

AhpC/TSA family protein. Thioredoxin-like

-1,25

-1,89

DDB0203727

AhpC/TSA family protein. Thioredoxin-like

-1,11

-2,00

DDB0205904

AhpC/TSA family protein. Thioredoxin-like

-1,10

-1,63

DDB0168230

Cytochrome P450

0,61

0,67

DDB0217979

cytochrome P450 family protein

-1,11

-1,24

DDB0187276

cytochrome P450 family protein

-0,73

-0,88

DDB0186118

cytochrome P450 family protein

-0,54

-0,51

DDB0167587

Glutathione S-transferase

-2,24

-2,02

DDB0218804

Glutathione S-transferase

-1,07

-0,86

DDB0185602

putative FMN-dependent NAD(P)H:quinone reductase

-0,66

-0,93

DDB0168563

putative glutathione S-transferase

-0,64

-1,23

DDB0201962

Ku70-binding family protein

-0,60

-0,51

DDB0191833

TFIIH4, "TFIIH_subunit, general_transcription_factor_IIH,_polypeptide_4"

-0,81

-0,90

DDB0204089

NUDIX hydrolase family

-0,89

-1,14

DDB0185428

Strictosidine synthase

-1,74

-1,01

DDB0169033

trap1, Dd-trap1, "TNF_receptor-associated_protein", member of the HSP90 fam

-1,93

-1,56

DDB0188234

Chaperone clpB

-1,00

-1,25

DDB0192088

heat shock cognate protein

-0,82

-0,99

DDB0192086

heat shock protein, 70 kDa heat shock protein

-0,94

-1,18

DDB0169051

Hsp20/alpha crystallin family

-1,13

-1,30

DDB0169044

Hsp20/alpha crystallin family

-1,07

-1,12

DDB0169207

hspG12, heat shock protein Hsp20 domain-containing protein

-0,72

-0,86

Transcription

  

DDB0204405

CRTF;"transcription_factor"

0,97

1,15

DDB0167879

IWS1 C-terminus

0,70

0,69

DDB0205969

snd1, tudor domain-containing protein

0,66

0,79

DDB0188840

TFIIAL, "transcription_factor_IIA"

-0,79

-0,55

DDB0167865

ddx52, DEAD/DEAH box helicase

-0,55

-0,55

DDB0184074

ddx6, DEAD/DEAH box helicase

0,62

0,66

DDB0184228

DEAD/DEAH box helicase

-0,63

-0,60

DDB0206136

myb domain-containing protein

0,59

0,58

DDB0189583

rpmA;"DNA-dependent_RNA_polymerase"

-1,33

-1,17

DDB0186101

pwp2, ortholog of H. sapiens and S. cerevisiae PWP2

-0,80

-0,88

DDB0192008

rpa2, RNA polymerase I, second largest subunit

-0,98

-1,13

DDB0218008

rpc4;"putative_RNA_polymerase_III_subunit"

-0,58

-0,55

DDB0216877

tRNA pseudouridine synthase

-0,56

-0,65

DDB0204724

DNA helicase TIP49, TBP-interacting protei

0,63

0,64

DDB0219410

pirin-like protein

-0,99

-0,81

Translation

  

DDB0167043

Ribosomal protein L10

-0,86

-1,37

DDB0190639

Fibrillarin

-0,65

-0,84

DDB0184302

Mitochondrial small ribosomal subunit Rsm22

-0,70

-0,72

DDB0205674

MPP10, U3 small nucleolar ribonucleoprotein

-0,77

-0,66

DDB0201601

mrpl11, S60 ribosomal protein L11, mitochondrial

-0,91

-1,26

DDB0204554

Ribosomal protein L28

-0,50

-0,69

DDB0188692

Ribosomal protein S8e

-0,94

-0,79

DDB0183814

Ribosomal RNA processing protein 4

0,58

0,56

DDB0188661

rps9, "rp1024, v12", "40S_ribosomal_protein_S9

0,60

0,70

DDB0219852

u3 small nucleolar RNA interacting protein 2, putative

-0,75

-0,63

DDB0191852

eukaryotic translation initiation factor 3 subunit 5

0,59

0,54

DDB0203843

Eukaryotic translation initiation factor 6 (EIF-6)-like protein

-0,96

-0,64

DDB0189529

gfm2, mitochondrial translation elongation factor G

-0,59

-0,50

DDB0202851

NMD3 family

-0,95

-0,97

DDB0168814

aspartyl-tRNA_synthetase

0,70

0,98

Transport

  

DDB0217304

ABC transporter AbcG17

-1,58

-1,44

DDB0167281

ABC transporter mdrA2

-2,65

-1,44

DDB0167281

ABC transporter mdrA2

-2,26

-1,45

DDB0191940

abcB2;"ABC_transporter_B_family_protein"

0,87

0,93

DDB0188931

abcE1;"RNaseL_inhibitor-like_protein, non-transporter_ABC_protein"

0,61

0,74

DDB0189332

amino acid permease family protein

-0,72

-0,87

DDB0168564

Amino acid/polyamine transporter

-1,28

-1,06

DDB0190286

mcfF, Mitochondrial carrier protein

-0,99

-0,86

DDB0216936

mftA;"carrier_protein_RIM"

-0,91

-1,05

DDB0188529

nucleoporin family protein

-0,94

-0,72

DDB0189222

ccsA, copper chaperone for superoxide dismutase

-0,69

-0,62

DDB0205129

Co/Zn/Cd efflux system component

-0,56

-0,71

DDB0202441

nhe1, DdNHE1, "Na-H_exchanger, sodium/hydrogen_exchanger"

-0,77

-0,59

DDB0168533

porA;porin

0,68

0,59

DDB0218156

P-type cation-transporting ATPase

-0,69

-0,57

DDB0189480

mcfT, mitochondrial substrate carrier family protein

-0,74

-0,86

DDB0202337

Nodulin, Major Facilitator Superfamily

-0,60

-0,68

DDB0185520

Nucleoside transporter

-0,53

-0,56

DDB0203447

Sugar (and other) transporter

1,01

0,71

DDB0168979

Sugar transport proteins signature 1

-0,78

-1,28

DDB0189650

sodium/potassium-transporting ATPase alpha chain 2

-1,48

-0,81

DDB0190036

Major Facilitator Superfamily

-1,13

-1,05

DDB0205693

Major Facilitator Superfamily

-1,33

-1,08