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Table 2 List of selected up- and down- regulated genes during alkali adaptation.

From: Genomic and proteomic analysis of the Alkali-Tolerance Response (AlTR) in Listeria monocytogenes 10403S

Locus ID

Symbol

Fold

P value

Sub-functional category

Gene/protein name

lmo2673

NA

5.38

0.000

Adaptations to atypical conditions

Conserved hypothetical protein

lmo1074

NA

-3.92

0.007

Amino acids, peptides and amines

Highly similar to teichoic acid translocation permease protein TagG

lmo2250

arpJ

-3.65

0.007

 

Similar to amino acid ABC transporter, permease protein

lmo0847

NA

-3.34

0.008

 

Similar to glutamine ABC transporter (binding and transport protein)

lmo0997

clpE

3.64

0.013

 

ATP-dependent protease

LMOf2365_2469

NA

3.44

0.025

Anions

Phosphate ABC transporter, ATP-binding protein

LMOf2365_2470

NA

4.19

0.002

 

Phosphate ABC transporter, permease protein

lmo2495

NA

6.03

0.000

 

Similar to phosphate ABC transporter

LMOf6854_2559

NA

8.01

0.000

 

Phosphate ABC transporter, permease protein

lmo0097

NA

-6.17

0.004

Aromatic amino acid family

Similar to PTS system mannose-specific, factor IIC

lmo2202

NA

-3.61

0.001

Biosynthesis

Similar to 3-oxoacyl- acyl-carrier protein synthase

LMOf2365_2674

NA

3.18

0.055

 

Putative Dihydroxyacetone kinase, Dak1 subunit

LMOf6854_2815

NA

5.21

0.000

 

Dihydroxyacetone kinase, Dak2 subunit, putative

LMOf6854_2814

NA

5.79

0.000

 

Dihydroxyacetone kinase, Dak1 subunit, putative

lmo1389

NA

-4.31

0.006

Carbohydrates, organic alcohols & acids

Similar to sugar ABC transporter, ATP-binding protein

LMOf2365_1877

NA

-7.45

0.003

Cations and iron carrying compounds

Manganese ABC transporter, ATP-binding protein

lmo1848

NA

-6.13

0.003

 

Similar metal cations ABC transporter

lmo2087

NA

4.03

0.004

 

Similar to unknown proteins

lmo2507

ftsE

-4.06

0.002

Cell division

Highly similar to cell-division ATP-binding protein FtsE

lmo0582

iap

-3.9

0.004

 

P60 extra cellular protein, invasion associated protein iap

lmo1603

NA

-5.43

0.006

Degradation of proteins, peptides, and glycopeptides

Similar to aminopeptidase

lmo2230

NA

5.04

0.000

Detoxification

Similar to arsenate reductase

LMOf2365_2669

NA

3.22

0.048

DNA interactions

Transcriptional regulator, TetR family

lmo1398

recA

3.12

0.001

DNA replication, recombination, and repair

Recombination protein recA

lmo2489

uvrB

3.42

0.026

 

Excinuclease ABC (subunit B)

lmo2676

NA

3.48

0.022

 

Similar to UV-damage repair protein

lmo2717

cydB

-3.3

0.004

Electron transport

Highly similar to cytochrome D ubiquinol oxidase subunit II

lmo1067

NA

-4.37

0.005

General

Similar to GTP-binding elongation factor

lmo2494

NA

5.35

0.001

Glycolysis/gluconeogenesis

Similar to negative regulator of phosphate regulon

lmo0786

NA

-4.02

0.001

Other

Similar to acyl-carrier phosphodiesterase and to NAD(P)H dehydrogenase

lmo1870

NA

4.22

0.002

 

Similar to alkali phosphatase

lmo0820

NA

4.7

0.000

 

Some similarity to acatyltransferases

lmo1974

NA

5.12

0.001

 

Similar to transcription regulators, (GntR family)

LMOh7858_0838

NA

3.24

0.104

PTS

PTS system, mannose/fructose/sorbose family, IIA component subfamily

lmo2632

rplC

-3.44

0.003

Ribosomal proteins : synthesis and modification

Ribosomal protein L3

lmo0250

rplJ

-3.36

0.004

 

Ribosomal protein L10

lmo2631

rplD

-3.26

0.004

 

Ribosomal protein L4

lmo1252

NA

5.69

0.001

Role category not yet assigned

Similar to B. subtilis YxkD protein

lmo2695

NA

4.55

0.001

Sugars

Similar to dihydroxyacetone kinase