Table 2 Oligonucleotides used in this study. For oligonucleotides used in PCR the amplicon size is listed, and for those oligonucleotides used solely for DNA sequencing no product size is listed
From: Limited genetic diversity in Salmonella enterica Serovar Enteritidis PT13
Oligonucleotide | Target | Sequence (5' to 3') | Product size (bp) | Reference |
|---|---|---|---|---|
sfimAF | fimA | TCAGGGGAGAAACAGAAAACTAAT | 760 | [25] |
sfimAR | Â | TCCCCGATAGCCTCTTCC | Â | [25] |
smanBF | manB | CATAACCCGATGGACTACAACG | 893 | [25] |
smanBR | Â | ACCAGCAGCCACGGGATCAT | Â | [25] |
smdhF | mdh | GATGAAAGTCGCAGTCCTCG | 849 | [25] |
smdhR | Â | TATCCAGCATAGCGTCCAGC | Â | [25] |
ccmBF | ccmB | TCACCCTGTTTCCGTTAAGC | 430 | This study |
ccmBR | Â | AAAATCAGCACCGGGACAC | Â | This study |
umuCF | umuC | TGACCACACTCGAGGAGATG | 493 | This study |
umuCR | Â | CAAACGATTTCCTGCTTTGC | Â | This study |
fljAF | fljA | GGCGAGAAGCTGAAATATGG | 410 | This study |
fljAR | Â | ATTTACGCCTGTCGTTTTGC | Â | This study |
safA2F | safA | TAAGAGGTGCTCTGATATATAG | 959 | This study |
safA2R | Â | ATAGGGTAATTCTGCGGGTTG | Â | This study |
caiC1F | caiC | GAATCGTTCGGCAGTTTAGC | 874 | This study |
caiC1R | Â | GTTTCAGTCATACCATAAGAGG | Â | This study |
citT1F | citT | GATGATTGTCGGTATGATCC | 870 | This study |
citT1R | Â | GTAATATCTTTCCACGGCAC | Â | This study |
dmsA1F | dmsA | ACTACGGTGATTACTCTTCC | 869 | This study |
dmsA1R | Â | CTGGTTAATCAAACAGTTGC | Â | This study |
ratA1F | ratA | GGCAAGATTCACAGCATTCAG | 870 | This study |
ratA1R | Â | TGGGCGGTATTTATCGTTCG | Â | This study |
STM0660F | STM0660 | ACGATGTAGCCCATATTACG | 1191 | This study |
STM0660R | Â | CCTGGCGAAAGTATTCATCC | Â | This study |
spvC1 | spvC | AACTCCTTGCACAACCAAATG | 230 | This Study |
spvC2 | Â | ACCATATCCCTGAGCACACTG | Â | This Study |
Cya1sF | cyaA | CATTGACCATCCTAACATCCTTATAGAGAG | 3331 | [31] |
Cya6sR | Â | ACTGGCGATATCACTCAATAGCGG | Â | [31] |
Cya1sR | cyaA | ATGCTGCGTAGAACCACAGTCTTC | Â | [31] |
Cya2sF | cyaA | TGGATATCTGGGTGTGCCATCAGT | Â | [31] |
Cya2sR | cyaA | GACTTTACCCGGCAACGCTTCAAA | Â | [31] |
Cya3sF | cyaA | CGATTACCGGCGTTTACACCAT | Â | [31] |
Cya3sR | cyaA | ATATCTTTCGCCAGCAGACGTG | Â | [31] |
Cya4sF | cyaA | CGCAGGATATCGGCGTACTGA | Â | [31] |
Cya4sR | cyaA | GACGGCAATTTCACCTGGTGGTT | Â | [31] |
Cya5sF | cyaA | GCGTCGGGAAGTATTAAGCCAGTT | Â | [31] |
Cya5sR | cyaA | AGGTCGACAATACCGTTGCCCTTA | Â | [31] |
Cya6sF | cyaA | TACGTCTTCCAGCACCCGTCA | Â | [31] |