Table 1 Frequency of 51 shared spoligotypes (SITs) according to Brudey et al. [14], identifiedin 173 Mycobacterium tuberculosis strains isolated in Paraguay, 2003
From: First insight into Mycobacterium tuberculosis genetic diversity in Paraguay
SIT | Octal Number | Strains in this study | Strains in SpolDB4 | % in this study as compared to SpolDB4 | Lineage | ||
|---|---|---|---|---|---|---|---|
| Â | Â | n | % | n | % | Â | Â |
42 | 777777607760771 | 40 | 18.2 | 1926 | 4.5 | 2.1 | LAM |
391 | 743777607760731 | 21 | 9.5 | 23 | 0.1 | 91.3 | LAM |
34 | 776377777760771 | 16 | 7.3 | 618 | 1.4 | 2.6 | S |
50 | 777777777720771 | 9 | 4.1 | 2128 | 5.0 | 0.4 | Haarlem |
93 | 777737607760771 | 6 | 2.7 | 267 | 0.6 | 2.2 | LAM |
521 | 777777777760611 | 6 | 2.7 | 22 | 0.1 | 27.3 | T |
52 | 777777777760731 | 4 | 1.8 | 518 | 1.2 | 0.8 | T |
159 | 777740017760771 | 4 | 1.8 | 64 | 0.2 | 6.3 | unknown |
4 | 000000007760771 | 3 | 1.4 | 220 | 0.5 | 1.4 | unknown |
53 | 777777777760771 | 3 | 1.4 | 3738 | 8.8 | 0.1 | T |
177 | 377777607760771 | 3 | 1.4 | 50 | 0.1 | 6.0 | LAM |
1356 | 776377777760751 | 3 | 1.4 | 12 | 0.0 | 25.0 | S |
1827 | 777703600020771 | 3 | 1.4 | 6 | 0.0 | 50.0 | Haarlem |
1832 | 777773607760771 | 3 | 1.4 | 14 | 0.0 | 21.4 | LAM |
7 | 377777777760771 | 2 | 0.9 | 54 | 0.1 | 3.7 | T |
33 | 776177607760771 | 2 | 0.9 | 770 | 1.8 | 0.3 | LAM |
36 | 777737777720771 | 2 | 0.9 | 77 | 0.2 | 2.6 | T |
47 | 777777774020771 | 2 | 0.9 | 1021 | 2.4 | 0.2 | Haarlem |
49 | 777777777720731 | 2 | 0.9 | 115 | 0.3 | 1.7 | Haarlem |
60 | 777777607760731 | 2 | 0.9 | 178 | 0.4 | 1.1 | LAM |
95 | 777777607560731 | 2 | 0.9 | 30 | 0.1 | 6.7 | LAM |
125 | 000000007760731 | 2 | 0.9 | 55 | 0.1 | 3.6 | unknown |
737 | 777777607760571 | 2 | 0.9 | 11 | 0.0 | 18.2 | LAM |
753 | 477777607760771 | 2 | 0.9 | 16 | 0.0 | 12.5 | LAM |
828 | 377777607760731 | 2 | 0.9 | 20 | 0.0 | 10.0 | LAM |
1803 | 617777607760771 | 2 | 0.9 | 7 | 0.0 | 28.6 | LAM |
1 | 000000000003771 | 1 | 0.5 | 5610 | 13.2 | 0.0 | Beijing |
2 | 000000004020771 | 1 | 0.5 | 337 | 0.8 | 0.3 | Haarlem |
17 | 677737607760771 | 1 | 0.5 | 473 | 1.1 | 0.2 | LAM |
20 | 677777607760771 | 1 | 0.5 | 588 | 1.4 | 0.2 | LAM |
56 | 777737770000000 | 1 | 0.5 | 18 | 0.0 | 5.6 | unknown |
58 | 777777557760771 | 1 | 0.5 | 119 | 0.3 | 0.8 | unknown |
62 | 777777774020731 | 1 | 0.5 | 233 | 0.5 | 0.4 | Haarlem |
92 | 700076777760771 | 1 | 0.5 | 328 | 0.8 | 0.3 | X |
102 | 777703777760771 | 1 | 0.5 | 56 | 0.1 | 1.8 | unknown |
162 | 777777607760671 | 1 | 0.5 | 17 | 0.0 | 5.9 | unknown |
211 | 776137607760771 | 1 | 0.5 | 63 | 0.1 | 1.6 | LAM |
254 | 777760007760771 | 1 | 0.5 | 120 | 0.3 | 0.8 | LAM |
393 | 777757777760771 | 1 | 0.5 | 19 | 0.0 | 5.3 | T |
397 | 777777600000771 | 1 | 0.5 | 13 | 0.0 | 7.7 | unknown |
439 | 777376777760601 | 1 | 0.5 | 3 | 0.0 | 33.3 | X |
578 | 637777607760771 | 1 | 0.5 | 27 | 0.1 | 3.7 | LAM |
746 | 777777777520771 | 1 | 0.5 | 22 | 0.1 | 4.5 | Haarlem |
765 | 777760077760771 | 1 | 0.5 | 7 | 0.0 | 14.3 | LAM |
781 | 000000004020731 | 1 | 0.5 | 9 | 0.0 | 11.1 | Haarlem |
784 | 776377777760731 | 1 | 0.5 | 39 | 0.1 | 2.6 | S |
1063 | 776377777660771 | 1 | 0.5 | 24 | 0.1 | 4.2 | S |
1367 | 377737607760771 | 1 | 0.5 | 3 | 0.0 | 33.3 | LAM |
1610 | 763777607560771 | 1 | 0.5 | 5 | 0.0 | 20.0 | LAM |
1892 | 777777660000171 | 1 | 0.5 | 5 | 0.0 | 20.0 | unknown |
2644 | 177777777720771 | 1 | 0.5 | 3 | 0.0 | 33.3 | Haarlem |