Table 5 Properties of the NgoΦ3 CDS' sequences
NgoΦ3 CDSs | Genome position | Length (aa) | Putative function | Significant matches to proteins in GeneBank (Scores represent filtered BLASTP % identities over stated number of amino acid) |
|---|---|---|---|---|
NGO1613 | 1592225–1593043 | 384 | integrase | [Xylella fastidiosa Dixon] (phage integrase family) 0524 35,52% on,367, [Pseudomonas syringe tomato str. DC3000] 24,38% on 340, int [Azoarcus sp. EbN1] 25,42% on 365 |
NGO1614 | 1595199–1595750 | 88 | NS | |
NGO1625 | 1596026–1596241 | 138 | NS | |
NGO1626 | 1583028–1584182 | 215 | conserved hypothetical protein | CDS21 [Bacteriophage bIL311] (pfam GepA,) 29,48% on 116 |
NGO1627 | 1584232–1584498 | 133 | hypothetical protein | HP2p14 protein [Haemophilus phage (pfam UPFO150 family) HP2] 34,54% on 129 |
NGO1628 | 1590177–1590593 | 60 | conserved hypothetical protein | [HP1p18] protein [Haemophilus (COG1724) phage HP1] 60,74% on 51 |
NGO1629 | 1590602–1591249 | 272 | NS | |
NGO1634 | 1591369–1591770 | 183 | hypothetical protein | hypothetical protein [P27p17] [Bacteriophage P27] 30,51% on 147 replication protein [SfVp87] [Shigella flexneri bacteriophage V] 32,54% on 87 |
NGO1635 | 1591873–1592055 | 71 | NS | |
NGO1636 | 1596419–1597036 | 205 | DnaC-like protein | [STM2625] protein [Phage Gifsy-1] (pfam IstB family) 37,51% on 201, replication protein DnaC [Bacteriophage P27] 37,56% on 192 |
NGO1637 | 1597106–1597261 | 51 | NS | |
NGO1639 | 1597884–1598387 | 167 | hypothetical protein | NMB1116 [Neisseria meningitidis MC58] 88,96% on 27 |
NGO1651 | 1608278–1608616 | 113 | Neisseria-specific protein, uncharacterized | |
NGO1652 | 1609818–1608823 | 332 | putative antirepressor | protein Ant [Bacteriophage (pfam Bro-N family) 1085 Aaphi23] |