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Table 4 Properties of the NgoΦ2 CDS' sequences

From: Characterization of the dsDNA prophage sequences in the genome of Neisseria gonorrhoeae and visualization of productive bacteriophage

NgoΦ2 CDSs Genome position Length (aa) Putative function Significant matches to proteins in GenBank (Scores represent filtered BLASTP % identities over stated number of amino acid) CDSs
NGO1085 1044447–1045292 281 prophage antirepressor protein 933N], 37, 56% on 20 Ant [Phage Aaphi23], 41, 56% on 258 (pfam02498, Bro N family) [E. coli prop CP933N], 37, 56% on 20
NGO1087 1045494–1046174 226 NS  
NGO1088 1046153–1046638 161 hypothetical protein F116p45 [P. aeruginosa phage F116] 31, 42% on 148
NGO1089 1046644–104711 157 phage structural protein F116p44 [P. aeruginosa phage F116] 42% on 140
NGO1090 1047173–1048468 431 phage structural protein F116p43 [P. aeruginosa phage F116] 56, 72% on 415
NGO1091 1048489–1048887 132 hypothetical protein F116p42 [P. aeruginosa phage F116] 34, 49% on 141
NGO1092 1049094–1055027 1977 possible DNA methylase [Sinorhizobium meliloti phage PBC5] 33, 52% on 584
NGO1093 1055027–1056445 472 NS [S. meliloti phage PBC5] 33, 52% on 584 hypothetical protein F116 p60
NGO1094 1056442–1057638 398 NS  
NGO1096 1058422–1058637 71 NS  
NGO1097 1058674–106026 750 phage portal protein F116p40 [P. aeruginosa phage F116] 58, 71% on 756
NGO1098 1060926–1062200 424 phage terminase large subunit Terminase 3 family ZMO0379 [Zymomonas mobilis subsp.mobilis ZM4]phage terminase large subunit 35, 50% on 397
NGO1099 1062181–1062423 80 NS [H. influenzae RdKW20] 44, 67% on 168
NGO1100 1062478–1062720 80 prophage terminase small subunit STY1046 [S. enterica subsp. enterica serovar Typhi] small subunit 33, 57% on 45
NGO1101 1062720–1063034 104 hypothetical protein F116p37 [P. aeruginosa phage F116] 38, 59% on 81
NGO1102 1063207–1063725 172 endonuclease of the HNH family 17R [Xanthomonas oryzae phage endonuclease Xp10] 41, 53% on 167 [S. thermophilus phage ST3] 47, 55% on 85
NGO1103 1063716–1064099 127 protein Nin B HK022 p48 [Enterobacteria phage HK022]30, 50% on 121, 933Wp33 [Phage 933W] 27, 49% on 99
NGO1104 1064096–1064401 101 hypothetical protein F116 p35 [P. aeruginosa F116] 42, 57% on 98 pfam DUF 1364 CDS-136 [S. typhimurium phage ST64T] 53, 66% on 30
NGO1105 1064373–1064993 206 NS  
NGO1107 1065246–1065614 122 hypothetical protein NMB1116 [N. meningitidis] 88, 96% on 27
NGO1115 1069893–1070081 62 NS  
NGO1116 1070260–1070907 215 transcriptional regulator NMB0910 [N. meningitidis regulator MC58] 83, 87% on 215, F116p29 [P. aeruginosa phage F116] 39, 54% on 157 putative CI protein cI [Phage Aaphi23]37, 54% on 191, cI [Pseudomonas phage D3]30, 44% on 218
NGO1117 1071067–1071606 179 hypothetical protein CDS21 [Phage bIL311] GepA [phage-like] 37, 53% on 135, SpyM3_1207 [S. pyogenes phage 315.4] 40, 66% on 71
NGO1118 1071607–1071966 119 NS  
NGO1119 1071983–1072201 72 NS  
NGO1132 1078087–1078281 64 hypothetical protein 33 [Enterobacteria phage epsilon15] 68% on 44