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Table 4 Properties of the NgoΦ2 CDS' sequences

From: Characterization of the dsDNA prophage sequences in the genome of Neisseria gonorrhoeae and visualization of productive bacteriophage

NgoΦ2 CDSs

Genome position

Length (aa)

Putative function

Significant matches to proteins in GenBank (Scores represent filtered BLASTP % identities over stated number of amino acid) CDSs

NGO1085

1044447–1045292

281

prophage antirepressor protein 933N], 37, 56% on 20

Ant [Phage Aaphi23], 41, 56% on 258 (pfam02498, Bro N family) [E. coli prop CP933N], 37, 56% on 20

NGO1087

1045494–1046174

226

NS

 

NGO1088

1046153–1046638

161

hypothetical protein

F116p45 [P. aeruginosa phage F116] 31, 42% on 148

NGO1089

1046644–104711

157

phage structural protein

F116p44 [P. aeruginosa phage F116] 42% on 140

NGO1090

1047173–1048468

431

phage structural protein

F116p43 [P. aeruginosa phage F116] 56, 72% on 415

NGO1091

1048489–1048887

132

hypothetical protein

F116p42 [P. aeruginosa phage F116] 34, 49% on 141

NGO1092

1049094–1055027

1977

possible DNA methylase

[Sinorhizobium meliloti phage PBC5] 33, 52% on 584

NGO1093

1055027–1056445

472

NS

[S. meliloti phage PBC5] 33, 52% on 584 hypothetical protein F116 p60

NGO1094

1056442–1057638

398

NS

 

NGO1096

1058422–1058637

71

NS

 

NGO1097

1058674–106026

750

phage portal protein

F116p40 [P. aeruginosa phage F116] 58, 71% on 756

NGO1098

1060926–1062200

424

phage terminase large subunit Terminase 3 family

ZMO0379 [Zymomonas mobilis subsp.mobilis ZM4]phage terminase large subunit 35, 50% on 397

NGO1099

1062181–1062423

80

NS

[H. influenzae RdKW20] 44, 67% on 168

NGO1100

1062478–1062720

80

prophage terminase small subunit

STY1046 [S. enterica subsp. enterica serovar Typhi] small subunit 33, 57% on 45

NGO1101

1062720–1063034

104

hypothetical protein

F116p37 [P. aeruginosa phage F116] 38, 59% on 81

NGO1102

1063207–1063725

172

endonuclease of the HNH family

17R [Xanthomonas oryzae phage endonuclease Xp10] 41, 53% on 167 [S. thermophilus phage ST3] 47, 55% on 85

NGO1103

1063716–1064099

127

protein Nin B

HK022 p48 [Enterobacteria phage HK022]30, 50% on 121, 933Wp33 [Phage 933W] 27, 49% on 99

NGO1104

1064096–1064401

101

hypothetical protein

F116 p35 [P. aeruginosa F116] 42, 57% on 98 pfam DUF 1364 CDS-136 [S. typhimurium phage ST64T] 53, 66% on 30

NGO1105

1064373–1064993

206

NS

 

NGO1107

1065246–1065614

122

hypothetical protein

NMB1116 [N. meningitidis] 88, 96% on 27

NGO1115

1069893–1070081

62

NS

 

NGO1116

1070260–1070907

215

transcriptional regulator

NMB0910 [N. meningitidis regulator MC58] 83, 87% on 215, F116p29 [P. aeruginosa phage F116] 39, 54% on 157 putative CI protein cI [Phage Aaphi23]37, 54% on 191, cI [Pseudomonas phage D3]30, 44% on 218

NGO1117

1071067–1071606

179

hypothetical protein

CDS21 [Phage bIL311] GepA [phage-like] 37, 53% on 135, SpyM3_1207 [S. pyogenes phage 315.4] 40, 66% on 71

NGO1118

1071607–1071966

119

NS

 

NGO1119

1071983–1072201

72

NS

 

NGO1132

1078087–1078281

64

hypothetical protein

33 [Enterobacteria phage epsilon15] 68% on 44