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Table 3 Properties of the NgoΦ1 CDS' sequences

From: Characterization of the dsDNA prophage sequences in the genome of Neisseria gonorrhoeae and visualization of productive bacteriophage

NgoΦ1 CDSs Genome position Length (aa) Putative function Significant matches to proteins in GenBank, scores represent filtered BLASTP, % identities, over stated number of amino acid) Identity with CDSs
      NgoΦ2 NgoΦ3
NGO0462 455173–456369 398 phage integrase VC0847 [Vibrio cholerae] 31, 51% on 406, Int A E. coli K12 32, 51% on 412   
NGO0463 456725–456994 89 NS*    
NGO0464 457189–457872 227 hypothetical protein B3 CDS5 [Bacteriophage B3] 29, 46% on 227 1130, 1131 2e+07
NGO0465 457883–458419 178 NS    
NGO0466 458530–458745 71 NS   1129 1617
NGO0467 458797–459288 163 hypothetical protein CDS8 [Streptococcus phage Φ-O1205] (pfam SiphoGp 35, 56% on 144, CDS157 [Streptococcus 157 family) Thermophilus phage Sfi21] 31, 51% on 160 1128 1618
NGO0468 459285–459467 60 NS   1127 1619
NGO0469 459607–460293 228 replication initiation BBTVs1gp1 [Banana bunchy top virus] replication protein 26, 43% on 109 primase A2p38 [Lactobacillus casei phage A2] 32, 44% on 87 1126 1620
NGO0470 460362–460523 53 NS   1125 1621
NGO0471 460520–460735 71 hypothetical protein NMB0904 [N. meningitidis MC58] 45, 63% on 61, gp30 [Burkholderia cepacia phage Bcep22] 37, 54% on 48 1124 1622
NGO0472 460949–461236 95 NS   1123 1623
NGO0473 461422–461697 91 NS   1122  
NGO0474 461694–462170 158 transcriptional regulator IrgB [V. cholerae strain N16961 serogroup O1] 26, 62% on 50 1121  
NGO0475 462203–462403 66 NS   1120 1624
NGO0476 462601–463014 137 NS    
NGO0477 463011–463448 145 transcriptional EF1886 [Enterococcus faecalis (pfam HTH 3 family) regulator V583] 45, 70% on 44, NMB1204 [N. meningitidis MC58] 32, 59% on 62   
NGO0478 463489–463926 145 NS    
NGO0479 464039–464755 238 repressor protein cI cI [Salmonella typhimurium (pfam peptidase 1630 phage T104] 29, 52% on 222 S24family), HK022 p43 [Enterobacteria phage HK022] 30, 49% on 223 [Pseudomonas phage D3] 26, 42% on 221   1630
NGO0480 465140–465295 51 NS   1114 1631
NGO0481 465272–465460 62 NS   1113 1632
NGO0482 465465–465827 120 NS    
NGO0483 46633–465860 75 hypothetical protein Bcep22p22 [B. cepacia phage Bcep22] 32, 52% on 71 1112 1633
NGO0484 465978–467042 354 DNA replication protein [Phage Aaphi23]33, 45% on 342 Gp54 [Phage HK97] 26, 42% on 123 [Enterobacteria phage P22] 24, 17% on 125 1111  
NGO0485 467039–468400 453 replicative DNA helicase (pfam DnaB family, DnaB-C family) [Enterobacteri a phage P1] 34, 53% on 446, CDS74 [Pseudomona s phage D3 ] 32, 55% on 430 1110  
NGO0486 468417–468701 94 NS   1109  
NGO0487 468740–469234 164 hypothetical protein SA1787 [Staphylococcus phage phiN315] 41, 51% on 58 1108 1638
NGO0488 469411–469560 49 NS   1106  
NGO0489 469696–470241 181 Endodeoxyribo-nuclease rus [Phage 82] 34, 47% on102 (pfamRusA family) RUS Sb45 [S. typhimurium phage ST64B ] 31, 44% on 113, rus [Phage HK620] 30, 47% on 96   1640
NGO0490 470231–470464 77 hypothetical protein gp18 [B. cepacia phage Bcep22] 46, 58% on 41   
NGO0491 470508–470915 135 NS    
NGO0492 471138–471644 168 NS    
NGO0493 471965–472186 73 hypothetical protein SfVp44 [Shigella flexner i phage V] 50, 67% on 34   
NGO0494 472479–472928 149 terminase small subunit f6p01 [Enterobacteria phage Sf6] 45, 69% on 122, 3 [Phage HK620] 45, 69% on 122   
NGO0495 472990–474411 473 terminase large subunit T1p5324 [Enterobacteria phage T1] (COG 24, 42% on 505, TerL [Phage terminase Aaphi23] 28, 45% on 438,   
NGO0496 474408–476555 715 phage portal protein gp34 [Phage phi-C31] (pfam Phage Mu F family) 25, 43% on 254, gp34 [Phage phiB 25], 43% on 258   
NGO0497 476623–477780 385 protease structural protein T5 150 [Phage T5] 31, 48% on 137 psiM100p19 [Methanothermobacter wolfeii prophage psiM100], 46% on 140   
NGO0498 477821–479320 499 hypothetical protein 2 [Equine herpesvirus 1] 23, 30% on 18   
NGO0499 479327–479689 120 NS    
NGO0500 479692–480222 176 hypothetical protein gp8 [Phage phiE125] 30, 44% on 125   
NGO0501 480370–480702 110 putative virion SO690 protein, prophage MuSo2, morphogenesis protein [Shewanella oneidensis MR-1] 47, 60% on 53   
NGO0502 480699–481127 142 NS    
NGO0503 481153–481926 257 NS    
NGO0504 481987–482316 109 hypothetical protein PHG31p11 protein [Aeromonas phage 31] 28, 46% on 88   
NGO0505 482328–482594 88 NS    
NGO0506 482594–483193 199 hypothetical protein gp83 [Phage phi JL001] 25, 46% on 80   
NGO0507 483190–484044 284 hypothetical protein gp84 [Phage phi JL001] 42, 58% on 103, D3112p50 [Phage D3112] 32, 47% on 50   
NGO0508 484046–484477 143 hypothetical protein BMEI1342 protein) (pfam06940, DUF1287 [Brucella melitenis] 33, 47% on 119   
NGO0509 484505–484789 93 unknown CDS114 [Pseudomonas phage phiKZ 43, 60%on 81 transcriptional regulator PP0276 [P. putida KT2440] Cro/cI family 39, 65% on 63   
NGO0510 485026–489171 1381 hypothetical protein gp86 [Phage phi JL001] 22,39% on 459 CDS97 [Lactobacillus plantarum phage LP65] 26, 42% on 173 putative phage tail protein HCM2.005c protein [S. enterica] 27, 44% on 180   
NGO0511 489283–489588 101 NS    
NGO0512 489593–490528 311 NS    
NGO0513 489659–490129 156 NS    
NGO0514 490130–490462 110 NS    
NGO0515 490591–490824 77 NS    
NGO0516 490832–491179 115 PemK    
NGO0517 491179–491415 78 PemI (pfam SpoVT AbrB family)   
NGO0518 491622–492161 114 hypothetical protein NMB0912 protein [N. meningitidis MC58] 32, 45% on 53   1649
NGO0519 492162–492506 120 NS    1650
NGO0520 492680–492990 103 NS    
NGO0521 493004–493153 49 hypothetical protein NMB0989 protein [N. meningitidis MC58] 55, 61% on 47   
NGO0522 493183–496230 1015 tail length tape JL00p82 [Phage phi JL001 measure protein 29, 50% on 407 putative tail component [Z6034] protein cryptic prophage CP-933P [E. coli] 27, 47% on 259   
NGO0523 496290–496769 159 hypothetical protein NMB0899 [N. meningitidis MC58] 100, 100% on 118 1095  
NGO0524 497111–498100 329 integrase [Haemophilus influenzae R2866] (pfam phage integrase family 49, 62% on 200   1613
  1. * No significant homology with any gene in the database