Characterization of the dsDNA prophage sequences in the genome of Neisseria gonorrhoeae and visualization of productive bacteriophage

Table 2 Localization of the prophage islands on the genome sequence of N. gonorrhoeae FA1090

Prophage	Sequence coordinates^a	Length of the DNA sequence (bp)	CDS annotations (Acc. No AE004969)	Number of CDS^#
ds DNA prophage sequences
NgoΦ1	455173 – 498100	42 927	NGO0462-NGO0524	63
NgoΦ2	1044447 – 1078281	33 834	NGO1085-NGO1132	48
NgoΦ3	1583028 – 1599049 1606828 – 1609808	16 021 2 980	NGO1613-NGO1640 NGO1649-NGO1652	284
NgoΦ4	972837 – 984008	11 171	NGO1000-NGO1020	21
NgoΦ5	721256 – 729870	8 614	NGO0720-NGO0732	13
Filamentous ss DNA prophage sequences
NgoΦ6	1080185 – 1088420	8 235	NGO1137 – NGO1146	13
NgoΦ7	1215967 – 1223383	7 416	NGO1262 – NGO1270	12
NgoΦ8	1103017 – 1109444	6 427	NGO1164 – NGO1170	8
NgoΦ9	1599378 – 1607537*	7 159	NGO1641 – NGO1648	9

^aCoordinates are relative to the DNA sequence contained at GenBank Acc. No AE004969.
^# Number ofCDSdetermined in this paper for NgoΦ6, NgoΦ7, NgoΦ8 and NgoΦ9 is higher than cited by National Center for Biotechnology Information.
Note that the sequence of NgoΦ9 is inserted within the sequence of NgoΦ3

ISSN: 1471-2180