Table 1 Oligonucleotide primers used in this study
From: Variability in SCC mecN1 spreading among injection drug users in Zurich, Switzerland
Primer name | Nucleotide sequence (5'-3') | Reference |
|---|---|---|
Mapping and sequencing | ||
1 | CATACACCAAGATAGACATC | This study |
2 | ACAACGCAGTAACTATGCAC | This study |
3 | GTTTATCTTCATAGACTAAC | This study |
4 | TTCGATGTACAATGACAGTC | IS431R, this study |
5 | AAGGATGTTATCACTGTAGC | IS431F, this study |
6 | ATGTCCCAAGCTCCATTTTG | HVR P1 F [42] |
7 | ACGTGTTAAGTATATTGCAC | This study |
8 | AAGTAGTAGCTCAACGAGCT | This study |
9 | CAGACAATCACATCTAACAC | This study |
10 | TGTTGATTGACAGTAAGGAC | This study |
11 | GAGTACTATAGCGTATGATGT | fusR, this study |
12 | ACAAACGATATGAATTCCCA | fusF, this study |
13 | GTTTATCTTCATAGACTAAC | This study |
14 | CTAATATGTTGGCGCTGATAT | This study |
15 | CTACACTACTATTCTTTCAC | This study |
16 | ATAATTACGACAATGACTGT | This study |
17 | CGACAATAGGATCTAAAGAT | This study |
Gene detection | ||
18 | TCCAGATTACAACTTCACCAGG | MECAP4 [20] |
19 | CCACTTCATATCTTGTAACG | MECAP7 [20] |
20 | AATAGACGTAACGTCGTACT | dfrAF, this study |
21 | AAGAATGTATGCGGTATAGT | dfrAR, this study |
Cloning | ||
22 | ATTAGGATCC CTAGCTGATTTAATCGTTGAAG | This study |
23 | ATTATCTAGA TAGTAAGATATAATGTTTGGG | This study |
24 | ATTAGGATCC GATTGATAGTATTGCAATCA | This study |
25 | ATTAGGATCC GTATAGGAGTGAATGAAATGG | This study |
26 | ATTAGGATCC ATTGTGCTTGCACAATCCTT | This study |
ccrAB4-1/-2 CHE482 | ||
27 | CAAATGATTGAAACAGAGGT | This study |
28 | CACGTTTTCTACAATAACGT | This study |