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Table 4 Single Nucleotide Polymorphisms (SNPs) in the viral genome segment sequences

From: Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus

    GiVB genome segment    
  1 2 3 4 5 6 7 8 Total
SNPs 351 107 270 166 216 354 421 174 2159
per Kbp 17.53 4.55 16.52 12.18 12.27 18.32 18.79 17.40  
Non-Coding 232 91 149 74 195 239 269 102 1351
Coding 119 16 121 92 121 115 152 72 808
Synonymous 36 3 37 27 44 42 46 15 250
Non-synonymous 83 13 84 65 77 73 106 57 558
Coverage 10.1 11.5 9.8 9.8 16.3 10.9 10.3 5.2  
R2 0.25* < 0.01 0.14 < 0.01 < 0.01 0.05 0.02 0.08  
  1. *p < 0.05
  2. Coverage indicates average sequence coverage across the viral genome segment in the whole genome shotgun, and R2 represents the correlation between the number of SNPs and sequence coverage. Only viral genome segment 1 showed a significant (p < 0.05) correlation between SNP density and coverage.