Figure 3

Nucleotide conservation extended 30 bp in both directions around the GCT excision site. A) 5' motif of proviral genome segments in GiBV proviral locus 1, in which sequence to the left of the motif represents inter-segmental sequences and sequence to the right of the motif represents proviral genome segment sequences. B) 3' motif of proviral genome segments GiBV proviral locus 1, in which the positions of inter-segmental and proviral genome segment sequences are reversed with respect to A). C) Extended motif from the 8 viral genome segments in proviral locus 1. D) Extended motif from all 30 CcBV viral genome segments. E) Extended motif from 13 of 15 MdBV viral genome segments.