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Table 1 Oligonucleotides used in this study

From: The promoter and transcribed regions of the Leishmania tarentolae spliced leader RNA gene array are devoid of nucleosomes

Letter

Sequence (5'-3')

Target

Blot hybridization and primer extension

A

TTTTTTTGTGCGTGTG

MINA SL

B

GCCTGCTCGCCGAGGTGTGG

"

C*

CGCGTGCTTGTGCTGGTGTGCG

"

D

CAGCGGGGCTGCTGTGTGGT

"

E

GCCCGGACATGATGGGCGGTGTGTG

"

F

GTTCCGGAAGTTTCGCATAC

"

G

TCTCTCTCTCTCTCACCATC

pX-tSL

H

CATCATCAACTGTCTCTTGT

"

I

TTTCAAGGCTTCCCGAACGC

"

J

GCGTGTGTTGAGCCGTCCACCGTA

"

K

ACTTCCTCGAGGCTGAA

"

L

ATCCTCTAGAGCGGCCGCCA

"

Revere complement probes

C'*

CGCACACCAGCACAAGCACAAGCACGCG

MINA SL

E'

CACACACCGCCCATCATGTCCGGGC

"

F'

GTATGCGAAACTTCCGGAAC

"

G'

GATGGTGAGAGAGAGAGAGA

pX-tSL

H'

ACAAGAGACAGTTGATGATG

"

K'

TTCAGCCTCGAGGAAGT

"

FISH

U3

C CTCCTGCCG TCAATCGAAACGC CT

U3 snoRNA

RRNA

AGCCA GCAGGCACGCC AGTGAGGCA TGTCTGG

rDNA IGS

NSTAG

TCCGGA AGTTTCGCATA CTTCCTCGAGGCTGAA

pX-tSL

  1. *: denotes oligonucleotides used for primer extension mapping.
  2. Underlined bases represent Tamara fluorophore labels.