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Table 6 B. pseudomallei1 duplicated loci mutation rates

From: Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping

Locus Set Locus Name Array start position in K96243 Chromo-some Inside CDS Array Size * Total Number of Mutations Insertions Deletions Single Repeat Changes Multiple Repeat Changes Lineages ** Mutation Rate
1 1839 k 1839378 Large no 7 × 2 1 - 1 1 - 82 6.12 × 10-5
1 3166 k 3166431 Small no - - - - - - -  
2 1853 k 1853384 Large no 7 × 27 3 - 3 2 1 94 1.71 × 10-4
2 2523 k 2523234 Small no 7 × 5 - - - - - 88  
2 817 k 817412 Small no 7 × 17 3 - 3 - 3 89 1.69 × 10-4
3 1546 k 1546409 Large no 6 × 20 - - - - - 83  
3 2620 k 2620013 Large no 6 × 20 3 1 2 3 - 93 1.64 × 10-4
3 3451 k 3451829 Large no 6 × 27 1 1 - 1 - 94 5.34 × 10-5
3 3103 k 3103500 Small no 6 × 27 2 1 1 2 - 94 1.07 × 10-4
4 200 k 199721 Small no 7 × 12 - - - - - 94  
4 735 k 734579 Small no 6 × 9 - - - - - 92  
5 1880 k 1879903 Small no 7 × 6 -   - - - 92  
5 3984 k 3983644 Large no 7 × 43 7 3 4 3 4 94 3.82 × 10-4
6 1558 k 1558336 Large no 6 × 11 - - - - - 37  
6 1343 K 1343285 Small yes - - - - - - -  
7 3851 k 3851246 Large no 7 × 17 1 - 1 - 1 41 1.25 × 10-4
7 2646 K 2646281 Small no - - - - - - -  
Total       21 6 15 12 9 † 83.36 1.23 × 10 -3
  1. 1An isolate from the Arizona department of health (Bp9905-1902) was used for this study.
  2. *Estimated array size in the B. pseudomallei strain used in the mutation rate study
  3. **Number of lineages successfully amplified out of 95 total
  4. † Average number of lineages to amplify