Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping

Table 6 B. pseudomallei¹ duplicated loci mutation rates

Locus Set	Locus Name	Array start position in K96243	Chromo-some	Inside CDS	Array Size *	Total Number of Mutations	Insertions	Deletions	Single Repeat Changes	Multiple Repeat Changes	Lineages **	Mutation Rate
1	1839 k	1839378	Large	no	7 × 2	1	-	1	1	-	82	6.12 × 10^-5
1	3166 k	3166431	Small	no	-	-	-	-	-	-	-
2	1853 k	1853384	Large	no	7 × 27	3	-	3	2	1	94	1.71 × 10^-4
2	2523 k	2523234	Small	no	7 × 5	-	-	-	-	-	88
2	817 k	817412	Small	no	7 × 17	3	-	3	-	3	89	1.69 × 10^-4
3	1546 k	1546409	Large	no	6 × 20	-	-	-	-	-	83
3	2620 k	2620013	Large	no	6 × 20	3	1	2	3	-	93	1.64 × 10^-4
3	3451 k	3451829	Large	no	6 × 27	1	1	-	1	-	94	5.34 × 10^-5
3	3103 k	3103500	Small	no	6 × 27	2	1	1	2	-	94	1.07 × 10^-4
4	200 k	199721	Small	no	7 × 12	-	-	-	-	-	94
4	735 k	734579	Small	no	6 × 9	-	-	-	-	-	92
5	1880 k	1879903	Small	no	7 × 6	-		-	-	-	92
5	3984 k	3983644	Large	no	7 × 43	7	3	4	3	4	94	3.82 × 10^-4
6	1558 k	1558336	Large	no	6 × 11	-	-	-	-	-	37
6	1343 K	1343285	Small	yes	-	-	-	-	-	-	-
7	3851 k	3851246	Large	no	7 × 17	1	-	1	-	1	41	1.25 × 10^-4
7	2646 K	2646281	Small	no	-	-	-	-	-	-	-
Total						21	6	15	12	9	† 83.36	1.23 × 10 ^-3

¹An isolate from the Arizona department of health (Bp9905-1902) was used for this study.
*Estimated array size in the B. pseudomallei strain used in the mutation rate study
**Number of lineages successfully amplified out of 95 total
† Average number of lineages to amplify

ISSN: 1471-2180