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Table 5 B. pseudomallei1 MLVA loci mutation rate

From: Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping

Locus Name Chromosome Inside CDS Array size* Total Number of Mutations Insertions Deletions Single Repeat Changes Multiple Repeat Changes Lineages** Mutation Rate
1788 k Small no 16 × 9 1 - 1 1 - 94 5.3 × 10-5
2862 k Small no 10 × 11 3 3 - 2 1 90 1.7 × 10-4
1367 k Small yes 9 × 22 1 - 1 1 - 75 6.7 × 10-5
3145 k Large no 9 × 13 1 1 - 1 - 84 6.0 × 10-5
2170 k Large no 9 × 12 4 4 - 4 - 89 2.3 × 10-4
1690 k Small no 8 × 13 2 - 2 2 - 93 1.1 × 10-4
933 k Large no 12 × 14 1 - 1 1 - 91 5.5 × 10-5
2065 k Small no 8 × 14 1 1 - 1 - 95 5.3 × 10-5
2050 k Small yes 9 × 16 1 - 1 1 - 93 5.4 × 10-5
2518 k Small no 7 × 22 2 2 - 2 - 90 1.1 × 10-4
3152 k Large no 6 × 25 2 2 - 2 - 95 1.1 × 10-4
2815 k Large yes 9 × 19 1 1 - 1 - 94 5.3 × 10-5
Total     20 14 6 19 1 † 92.50 1.113 × 10 -3
  1. 1An isolate from the Arizona department of health (Bp9905-1902) was used for this study.
  2. **Number of lineages successfully amplified out of 95 total
  3. † Average number of lineages to amplify