Table 1 Summary of B. pseudomallei chromosomal repeat region frequency, duplication and location in coding regions
Chromosome | Size (bp) | GC% | Tandem repeat (TR) regions‡ | TR/10 kb | #TR's in Sanger CDS | #TR's within 40 bp 5' of Sanger CDS | #TR's within 40 bp 3' of Sanger CDS | cis only duplicated TRs (in CDS)* | trans only duplicated TRs (in CDS)* | Both cis and trans duplicated TRs (in CDS)* | total dup arrays (in CDS)* |
|---|---|---|---|---|---|---|---|---|---|---|---|
Large | 4,074,542 | 67.7 | 285 | 0.699 | 72** | 8 | 43 | 22 (4) | 56 (12) | 30 (2) | 108 (18)*** |
Small | 3,173,005 | 68.5 | 324 | 1.021 | 103** | 11 | 42 | 25 (8) | 48 (14) | 41 (13) | 114 (35)*** |
Total | 7,247,547 | 68.1†| 609 | 0.860†| 175** | 19 | 85 | 47(12) | 104(26) | 71(15) | 222(53)*** |