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Table 6 Genes in the CPS/O-antigen biogenesis region

From: The capsule polysaccharide structure and biogenesis for non-O1 Vibrio cholerae NRT36S: genes are embedded in the LPS region

orf

symbol

annotated

%AA identity/positive

species

E-Value

0

gmhD

ADP-L-glycero-D-mannoheptose-6-epimerase

99/99

Vibrio cholerae

1.00E-180

1

rmlB

DTDP-D-glucose-4,6-dehydratase

99/99

Vibrio cholerae

0

2

rmlA

Glucose-1-phosphate thymidylyltransferase

100/100

Vibrio cholerae

1.00E-167

3

rmlD

DTDP-6-deoxy-L-mannose-dehydrogenase

99/99

Vibrio cholerae

1.00E-169

4

rmlC

DTDP-6-deoxy-D-glucose-3,5-epimerase

100/100

Vibrio cholerae

1.00E-104

5

wzm

ABC transporter system integral membrane protein

55/77

Raoultella terrigena

1.00E-81

6

wzt

ABC transporter system ATPase component

43/59

Nitrosospira multiformis

8.00E-86

7

 

glycosyltransferase

32/49

Rubrobacter xylanophilus

2.00E-24

8

 

glycosyltransferase

40/57

Nitrosospira multiformis

1.00E-125

9

 

glycosyltransferase

41/57

Burkholderia fungorum

1.10E-127

10

 

glycosyltransferase

38/56

Burkholderia sp.

8.00E-56

11

 

dTDP-glucose-4-keto-6-deoxy-D-glucose reductase

39/64

Actinobacillus actinomycetemcomitans

4.00E-21

12

 

probable acetyl transferase by domain

30/46

Cellulophaga sp.

0.049

13

 

hypothetical protein

   

14

 

3-hydroxybutyryl-CoA dehydrogenase

48/68

Pseudoalteromonas haloplanktis

2.00E-70

15

 

Hypothetical protein

   

16

 

glycosyltransferase

27/44

Syntrophus aciditrophicus

9.00E-06

17

 

Hypothetical protein

   

18

 

hypothetical protein

   

19

 

putative glycosyl transferase

55/69

Pseudomonas fluorescens

8.00E-97

20

 

UDP-N-acetylglucosamine 2-epimerase

67/82

Yersinia intermedia

1.00E-147

21

 

glycosyltransferase

96/97

Vibrio cholerae

2.00E-93

22

 

nucleoside-diphosphate sugar epimerase

99/99

Vibrio cholerae

0

23

galE

UDP-glucose 4-epimerase VC0262

98/99

Vibrio cholerae

0

24

wbeW

galactosyl-transferase VC0263

99/99

Vibrio cholerae

4.00E-91

25

 

Trypsin-like serine proteases

96/97

Vibrio cholerae

1.00E-123

26

wbfB

hypothetical protein

99/99

Vibrio cholerae

0

27

wbfC

hypothetical protein wbfC, periplasmic

97/97

Vibrio cholerae

1.00E-141

28

wbfD

hypothetical protein wbfD

98/98

Vibrio cholerae

1.00E-112

29

 

hypothetical protein

52/58

Vibrio cholerae

6.00E-12

30

wza

Periplasmic protein involved in capsular polysaccharide export

67/82

Vibrio splendidus

1.00E-151

31

wzb

Protein-tyrosine-phosphatase

75/88

Vibrio vulnificus

6.00E-59

32

wzc

Putative tyrosine-protein kinase Wzc

75/87

Vibrio vulnificus

0

33

rmlB

dTDP-D-glucose-4,6-dehydratase

98/98

Vibrio cholerae

0

34

rmlA

glucose-1-phosphate thymidylyltransferase

100/100

Vibrio cholerae

1.00E-167

35

rmlD

dTDP-6-deoxy-L-mannose-dehydrogenase

99/99

Vibrio cholerae

1.00E-169

36

rmlC

DTDP-6-deoxy-D-glucose-3,5-epimerase

92/94

Vibrio cholerae

1.00E-88

37

 

O-acetyltransferase

38/58

Enterococcus faecalis

8.00E-17

38

wzx

O-antigen translocase

30/48

Pelodictyon luteolum

2.00E-39

39

 

glucosyltransferase

34/53

Pseudoalteromonas tunicate

1.00E-39

40

wzy

Putative saccharide polymerase

   

41

 

Putative sugar acetyltransferase

51/72

COG0110, Cytophaga hutchinsonii

7.00E-43

42

 

glycosyltransferase

29/53

Cytophaga hutchinsonii

5.00E-41

43

 

Rhamnosyltransferase

66/77

Shewanella sp.

1.00E-113

44

Ugd

UDP-glucose 6-dehydrogenase

81/90

Vibrio sp.

0

45

wecA

Undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase

96/99

Vibrio cholerae

1.00E-157

46

 

Hypothetical protein

96/96

Vibrio cholerae

2.00E-63

47

rjg

Predicted exonuclease of the beta-lactamase fold involved in RNA processing

98/99

Vibrio cholerae

0