Table 5 S. Typhimurium gene expression ratios [51] compared to the homologous E. coli MG1655 genes.
From: Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
Salmonella LB LSMMG up-regulated | homologous E. coli gene expression | |||||
|---|---|---|---|---|---|---|
gene | STM ID# | ratio | gene | b# | LB ratio | MOPS ratio |
leuC | STM0111 | 8.33 | leuC | b0072 | 1.17 | 1.30 |
yaiV | STM0374 | 8.33 | yaiV | b0375 | 1.33 | 1.18 |
thiJ | STM0433 | 8.33 | thiJ | b0424 | 1.06 | -1.06 |
rstB | STM1471 | 10 | rstB | b1609 | -1.06 | 1.00 |
cysI | STM2947 | 8.33 | cysI | b2763 | 1.26 | 1.05 |
pgk | STM3039 | 10 | pgk | b2926 | -1.29 | -1.17 |
yhgN | STM3540 | 8.75 | yhgN | b3434 | -1.07 | -1.04 |
dppA | STM3630 | 8.33 | dppA | b3544 | -1.03 | 1.28 |
yjdC | STM4322 | 8.33 | yjdC | b4135 | -1.03 | 1.03 |
STM4545 | STM4545 | 8.75 | yjjB | b4363 | 1.04 | -1.03 |
Salmonella LB down-regulated | homologous E. coli gene expression | |||||
nfnB | STM0578 | -3.13 | nfnB | b0578 | -1.28 | -1.07 |
ahpC | STM0608 | -5.26 | ahpC | b0605 | -1.18 | -1.09 |
sucD | STM0739 | -3.33 | sucD | b0729 | -1.77 | -1.02 |
dps | STM0831 | -3.33 | dps | b0812 | 1.35 | -1.12 |
cybB | STM1639 | -3.45 | cybB | b1418 | -1.14 | -1.02 |
fruK | STM2205 | -5.88 | fruK | b2168 | 1.07 | -1.15 |
yfiC | STM2624 | -4.55 | yfiC | b2575 | -1.13 | 1.21 |
rplO | STM3421 | -3.57 | rplO | b3301 | -1.21 | 1.02 |
rpoC | STM4154 | -5.56 | rpoC | b3988 | -1.45 | 1.16 |
yjeP | STM4347 | -3.23 | yjeP | b4159 | 1.13 | -1.05 |