Table 1 LSMMG E. coli MG1655 genes up-regulated compared to the control in minimal MOPS medium.

flgB

b1073

yes

2.15

0.0043

flagellar biosynthesis, basal-body rod

periplasm

present

flgD

b1075

yes

2.00

0.0013

flagellar biosynthesis, initiation of hook assembly

membrane

present

flgE

b1076

yes

2.43

0.0002

flagellar biosynthesis, hook protein

membrane

present

flgK

b1082

2.01

0.0007

flagellar biosynthesis, hook-filament junction protein

membrane

present

flxA

b1566

2.14

0.0215

orf, hypothetical protein (member of FliA regulon)

membrane

ydfD

b1576

3.75

0.0003

prophage & phage related function (Qin prophage)

cheZ

b1881

yes

2.02

0.0032

chemotactic response; CheY protein phophatase

membrane

present

tar

b1886

?

2.02

0.0006

methyl-accepting chemotaxis protein II, sensor receptor

inner mem.

present

fliZ*

b1921

yes

2.25

0.0007

putative cell-density sigmaF response regulator

cytoplasm

present

fliC

b1923

yes

2.30

0.0155

flagellar biosynthesis; filament structural protein

membrane

present

fliD

b1924

2.06

0.0025

flagellar biosynthesis; filament capping protein

membrane

present

dctR*

b3507

2.57

0.0006

acid tolerance, dicarboxylate transport, 0157 adhesion

cytoplasm

hdeB

b3509

yes

6.34

0.0006

hdeA homolog, related to S. flexneri acid protein

periplasm

orthologue

hdeA

b3510

yes

4.43

0.0013

acid resistance protein, putative chaperone

periplasm

orthologue

hdeD

b3511

3.54

0.0003

acid resistance protein

putative mem.

gadE*

b3512

2.58

0.0036

acid-responsive GadABC regulator, 0157 adhesion

cytoplasm