Table 2 Core pH-dependent genes (both aerobic and oxygen-limited)1
Acid up-regulated | Base up-regulated | ||||
|---|---|---|---|---|---|
acnA | gatZ | rcsF | acfD | katG | tsx |
apaG | gcd | rob | acrA | lamB | ubiB |
argO | gdhA | rpoE | acrR | maa | uxuA |
aspC | gloA | rseA | alx | malE | yahA |
azoR | gnd | skp | artQ | malF | yahA |
b1052 | groS | sodB | atpA | malG | yajC |
cadA | grxB | srlA | atpC | malK | ybjK |
cdd | hdeA | srlB | atpF | malM | yccA |
cfa | hdeB | srlD | atpH | malP | yceI |
clpB | hsdR | srlE | b1172 | malQ | ycfS |
crcB | hybG | srlR | b3913 | malT | yciC |
cyaA | idi | tas | bdm | mdoD | ydcV |
dadA | kdsA | tehB | borD | mltD | ydeH |
dapB | kefB | tpiA | cpxA | mppA | yebE |
deoA | lysA | uspD | cpxP | mutL | yeeI |
deoB | lysC | wrbA | cpxR | nmpC | ygaH |
deoC | lysU | yagU | cvpA | nrdD | ygaZ |
deoD | mazG | yafE | dedA | nrdG | yghG |
dhaK | mcrB | ybaK | dnaX | ompF | yghJ |
dhaL | mdaB | ybhB | dsbA | ompT | ygiB |
dhaM | mdtI | ybjN | fadL | osmB | ygiC |
dpiA | mdtJ | ycfP | folP | pheA | yjdM |
dps | menB | ychH | ftnB | pitA | yjfO |
edd | menF | ydhM | fucR | pntA | yjhC |
fbp | metK | ydiH | gcvT | potD | yjhR |
fimA | metN | ydiZ | glk | ppiA | ymgD |
fimI | mrp | yeaQ | glpF | pppA | ynfD |
flgB | murI | yeiA | glpX | proV | Â |
flgC | nadC | yfiD | gpmM | purA | Â |
flgD | narG | ygdQ | hemY | purH | Â |
flgE | narH | yggE | hflK | purM | Â |
flgF | nemA | ygiN | hflX | rdoA | Â |
flgG | nhaB | ygiS | hisB | recA | Â |
fliA | npr | yhbJ | hisC | rnk | Â |
fliK | nupG | yheL | hisD | sdaA | Â |
fliL | pan E | yheN | hisF | sdaC | Â |
fre | pdxH | yheO | hisG | sdiA | Â |
galP | pdxK | yhhX | hisH | slt | Â |
gapC | pdxY | yieE | hisI | spy | Â |
gatA | pfkB | yieF | hisJ_ | sulA | Â |
gatB | pgi | yieP | htpX | tatA | Â |
gatC | pps | yiiS | ilvG | tgt | Â |
gatD | rbsA | yjjU | ilvN | tnaB | Â |
gatR | rbsC | ykgA | insH | treB | Â |
gatY | rbsD | yqhD | ivbL | treC | Â |
Acid up-regulated (anaerobic) Base up-regulated (aerobic) | Base up-regulated (anaerobic) Acid up-regulated (aerobic) | ||||
cydA | nhaA | ybjH | aceE | hslJ | rfbC |
cydB | pyrB | ydcH | aceF | icd | rfe |
dsdX | rbsB | yehU | aceK | lgt | ribA |
fdhF | tdcA | ygeW | add | lpxD | rplI |
glgS | tdcB | yhaN | argZ | lysP | sdhA |
hupA | tdcC | yjeJ | aspA | mltC | sdhB |
lsrK | tdcD | yjgB | b0725 | nfsA | sdhC |
manX | torR | yjiY | cyoA | ndk | sdhD |
manY | udp | yodD | cyoB | nuoA | sucA |
manZ | uspF | yohK | cyoC | nuoB | sucB |
narI | ybaT | yqjD | cyoD | nuoC | sucC |
| Â | Â | Â | dnaJ | nuoE | sucD |
| Â | Â | Â | dnaK | nuoF | thrC |
| Â | Â | Â | fdoG | nuoG | tpx |
| Â | Â | Â | fdoH | nuoH | wbbI |
| Â | Â | Â | fimG | nuoI | yeaC |
| Â | Â | Â | galF | nuoK | yebK |
| Â | Â | Â | gltA | nuoL | yeiU |
| Â | Â | Â | gpmA | oppC | yfdI |
| Â | Â | Â | groL | oppD | yffB |
| Â | Â | Â | guaB | oppF | yihG |
| Â | Â | Â | hha | purU | ylaC |
| Â | Â | Â | hsdS | rcsA | yqeG |