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Table 2 Non-target strains, tested with the primary and confirmatory PCR systems.

From: New PCR systems to confirm real-time PCR detection of Mycobacterium avium subsp. paratuberculosis

No. of strains Species Source Origin IS900 MP IS900 DH1 IS900 DH2 F57 DH3
1 MAAa Horse Sweden - + - -
1 MAA Human ATCC 35718 - - - -
1 MAA Domestic fowl ATCC 25291T - - - -
6 MAA Variousb Variousc - - - -
1 Mycobacterium species (strain 2333) Cattle Sweden + - - -
1 Mycobacterium speciesd Cat Sweden - - + -
1 Mycobacterium kansasii Human ATCC 12478T - - - -
1 Mycobacterium smegmatis Cattle Great Britain - - - -
1 Mycobacterium chelonei Cattle Sweden - - - -
1 Mycobacterium fortuitum Cattle Sweden - - - -
1 Mycobacterium bovis Deer Sweden - - - -
1 Mycobacterium bovis Cattle ATCC 19210T - - - -
1 Mycobacterium silvaticum Dove Sweden - - - -
1 Mycobacterium intracellulare Sparrow ATCC 35767 - - - -
1 Mycobacterium intracellulare   ATCC 13950T - - - -
1 Mycobacterium intracellulare Cattle ATCC 35771 - - - -
1 Mycobacterium scrofulaceum Human ATCC 19981T - - - -
1 Mycobacterium gordonae Human ATCC 14470T - - - -
1 Mycobacterium marinum Guppy Sweden - - - -
2 Mycobacterium marinum Dolphin Sweden - - - -
1 Mycobacterium malmoense Human CIP 105775T - - - -
1 Mycobacterium celatum Human CIP 106109 - - - -
1 Mycobacterium flavescens Guinea pig CIP 104533 - - - -
1 Mycobacterium komossense Sphagnum moss CIP 105293T - - - -
1 Mycobacterium marinum Saltwater fish CIP 104528T - - - -
1 Mycobacterium terrae Human CIP 104321T - - - -
1 Mycobacterium vaccae Cattle CIP 105934T - - - -
1 Mycobacterium xenopi Toad CIP 104035T - - - -
1 Mycobacterium speciese Turtle Sweden - - - -
1 Mycobacterium porcinum Swine CIP 105392 - - - -
1 Mycobacterium porcinum Bulk milk Italy - - - -
1 Mycobacterium hiberniae Soil CIP 104537 - - - -
1 Mycobacterium cookii Sphagnum moss ATCC 49103 - - - -
110 Mycobacterium species Variousf Variousg - - - -
1 Staphylococcus aureus   ATCC 25923 - - - -
1 Streptococcus dysgalactiae Cattle CCUG 27436 - - - -
1 Streptococcus uberis Cattle CCUG 27444 - - - -
1 Escherichia coli   ATCC 25922 - - - -
1 Arcanobacter pyogenes Cattle CCUG 39326 - - - -
1 Pseudomonas aeruginosa Human CCUG 17619 - - - -
  1. a. Mycobacterium avium subspecies avium.
  2. b. Cat (1), Cattle (1), Deer (1), Sheep (3).
  3. c. Sweden (3), Faroe Islands (1), Iceland (2).
  4. d. Mycobacterium kubicae-related strain.
  5. e. Mycobacterium nonchromogenicum-related strain.
  6. f. Cattle (59), Sheep (23), Monkey (1), Deer (2), Buffalo (1), Horse (1), Elephant (3), Ciclide (1), Antelope (1), Alpaca (2), Environmental (1), Cell culture (1), Peat (1).
  7. g. Sweden (82), Czech Republic (3), USA (11), Australia (2), Denmark (11), Great Britain (1)
  8. T. Type strain