Skip to main content

Advertisement

Table 3 "Bacterial and F-plasmid additive effects": genes whose expression level differs depending on bacterial background and whether or not they harbor an F-plasmid

From: Gene expression analysis indicates extensive genotype-specific crosstalk between the conjugative F-plasmid and the E. coli chromosome

  Fold-change     
Gene F vs. nonF (MG1655)* F vs nonF (DH5α)* MG1655 vs. DH5α# P (F-effect) P (strain-effect) Function Process
b1722 3.03 2.36 -2.03 0.005 0.012 Conserved-Hypothetical-ORF  
flhD 2.34 2.61 -5.22 0.002 0.0002 regulator of flagellar biosynthesis, transcriptional initiation factor Motility, chemotaxis, energytaxis (i.e. aerotaxis, redoxtaxis)
leuQ 2.78 2.19 3.50 0.050 0.022 Leucine tRNA  
osmY -2.98 -2.11 3.24 0.003 0.001 hyperosmotically inducible, periplasmic protein  
tra5_3 -2.53 -2.77 2.36 0.005 0.007 IS3 putative transposase  
ykfE -3.62 -4.84 2.13 0.003 0.023 ORF  
  1. *: Negative values indicate down-regulation in F-plasmid free cells.
  2. #: Negative values indicate down-regulation in MG1655.