Table 3 Comparison of GO profiling among different fungal species
From: Generation, annotation, and analysis of an extensive Aspergillus niger EST collection
| Â | Â | % Representation to total in main category | ||||||
|---|---|---|---|---|---|---|---|---|
Gene Ontology | Categories and subcategories | S. cerevisiae | S. pombe | N. crassa | P. chrysos-porium | A. niger | A. nidulans | M. grisea |
Biological process | metabolism | 71.4% | 72.7% | 76.0% | 74.6% | 75.6% | 71.4% | 75.3% |
| Â | cellular physiological process | 50.3% | 46.7% | 34.2% | 32.6% | 30.2% | 34.8% | 36.9% |
| Â | cell growth and/or maintenance | 48.5% | 45.2% | 31.9% | 31.6% | 29.4% | 33.8% | 36.2% |
| Â | cell communication | 4.8% | 11.05% | 12.8% | 4.7% | 3.8% | 3.9% | 4.3% |
Cellular component | cell | 99.3% | 99.74% | 96.8% | 95.5% | 98.1% | 97.8% | 96.5% |
| Â | unlocalized | 1.0% | 0.26% | 1.9% | 2.7% | 0.8% | 0.9% | 0.8% |
| Â | extracellular | 0.3% | 0.0% | 0.7% | 2.2% | 1.3% | 1.3% | 2.3% |
Molecular function | catalytic activity | 52.1% | 76.46% | 54.9% | 65.4% | 62.6% | 60.4% | 59.9% |
| Â | binding | 46.6% | 19.47% | 45.7% | 43.0% | 41.8% | 41.5% | 49.5% |
| Â | transporter activity | 14.8% | 1.50% | 11.0% | 10.6% | 15.5% | 12.2% | 10.1% |
| Â | transcription regulator activity | 6.6% | 4.28% | 4.9% | 3.3% | 4.6% | 6.6% | 4.1% |
| Â | structural molecule activity | 5.3% | 0.0% | 2.9% | 1.9% | 2.1% | 1.7% | 2.2% |
| Â | enzyme regulator activity | 2.9% | 0.86% | 1.3% | 1.1% | 0.7% | 0.7% | 0.9% |
| Â | chaperone activity | 2.2% | 2.50% | 1.5% | 1.1% | 1.1% | 0.8% | 1.0% |
| Â | signal transducer activity | 1.9% | 0.0% | 1.8% | 1.9% | 1.5% | 1.1% | 1.2% |
| Â | translation regulator activity | 1.4% | 0.0% | 1.2% | 1.1% | 1.8% | 0.8% | 0.8% |