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Table 1 Organisms identified by double matches of restriction enzyme/fluorescent label combinations

From: Influence of plant diversity and elevated atmospheric carbon dioxide levels on belowground bacterial diversity

Enzyme/label combination

Fragment

Organism identified, species

strain; type culture collection number

number of plots (out of 24) where strain was detected

Bst-FAM Ă— BstU-JOE

226/173

Clostridium botulinum

202F; ATCC 23387

5

  

Clostridium butyricum

E.VI.3.6.1.; NCIMB 8082

 
  

Clostridium butyricum

MMP3; DSM 2478

 
  

Clostridium butyricum

ATCC 43755

 
 

236/173

Bacillus subtilis

 

7

  

unidentified species

16SX-1

 
  

unidentified species

16SX-2

 

BstU-JOE Ă— MNL-JOE

171/93

Ralstonia solanacearum

ACH 0732

24

 

171/93

Piscirickettsia salmonis

 

5

 

173/93

Pirellula sp. (uncultered)

clone 5H12

5

  

Thermoanaerobacterium saccharolyticum

B6A-RI

 
 

275/93

Ferribacterium limneticum

cda-1

3

  

Escherichia coli chloroplast of Marchantia polymorpha

  

BstU-JOE Ă— MNL-FAM

173/210

symbiont of Crithidia sp.

 

24

 

275/205

unidentified strain from Gossenköllesee

 

3

 

275/211

Azoarcus sp.

PH002

7

  

Azoarcus sp.

CR23

 
  

Azoarcus sp.

FL05

 
  

unidentified species

clone A1–13

 
  

unidentified species

cloneSJA-62

 
 

275/217

Salmonella typhimurium

E10 NCTC 8391

15

 

275/226

unidentified species

clone SJA-47

2

MNL-JOE Ă— BstU-FAM

226/93

Clostridium algidicarnis

NCFB 2931 (T)

1

BstU-FAM Ă— MNL-FAM

103/211

unidentified species

clone SJA-112

11

 

219/426

Frankia sp.

L27

1

  

Kibdelosporangium aridum subsp. aridum

  
  

Mycobacterium asiaticum

N6IH; ATCC 25276

 
 

221/129

Nocardia crassostreae

RB1

22

  

Nocardia crassostreae

OB3

 
 

221/183

Sulfobacillus disulfidooxidans

SD-11

12

  

Kitasatospora paracochleata

14769

 
  

Kitasatospora melanogena

JCM 3337

 
  

Kitasatospora kifuense

JCM 9081

 
 

236/138

Leuconostoc citreum

NCDO 2787

7

  

Leuconostoc lactis

ATCC 19256

 
  

Leuconostoc mesenteroides subsp. mesenteroides

ATCC 8293

 
 

388/210

Oxalobacter formigenes

BLISS

12

 

390/211

Pseudomonas sp.

B13

11

MNL-FAM Ă— MNL-JOE

134/93

Clostridium perfringens

CPN50

2