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Table 1 Organisms identified by double matches of restriction enzyme/fluorescent label combinations

From: Influence of plant diversity and elevated atmospheric carbon dioxide levels on belowground bacterial diversity

Enzyme/label combination Fragment Organism identified, species strain; type culture collection number number of plots (out of 24) where strain was detected
Bst-FAM × BstU-JOE 226/173 Clostridium botulinum 202F; ATCC 23387 5
   Clostridium butyricum E.VI.3.6.1.; NCIMB 8082  
   Clostridium butyricum MMP3; DSM 2478  
   Clostridium butyricum ATCC 43755  
  236/173 Bacillus subtilis   7
   unidentified species 16SX-1  
   unidentified species 16SX-2  
BstU-JOE × MNL-JOE 171/93 Ralstonia solanacearum ACH 0732 24
  171/93 Piscirickettsia salmonis   5
  173/93 Pirellula sp. (uncultered) clone 5H12 5
   Thermoanaerobacterium saccharolyticum B6A-RI  
  275/93 Ferribacterium limneticum cda-1 3
   Escherichia coli chloroplast of Marchantia polymorpha   
BstU-JOE × MNL-FAM 173/210 symbiont of Crithidia sp.   24
  275/205 unidentified strain from Gossenköllesee   3
  275/211 Azoarcus sp. PH002 7
   Azoarcus sp. CR23  
   Azoarcus sp. FL05  
   unidentified species clone A1–13  
   unidentified species cloneSJA-62  
  275/217 Salmonella typhimurium E10 NCTC 8391 15
  275/226 unidentified species clone SJA-47 2
MNL-JOE × BstU-FAM 226/93 Clostridium algidicarnis NCFB 2931 (T) 1
BstU-FAM × MNL-FAM 103/211 unidentified species clone SJA-112 11
  219/426 Frankia sp. L27 1
   Kibdelosporangium aridum subsp. aridum   
   Mycobacterium asiaticum N6IH; ATCC 25276  
  221/129 Nocardia crassostreae RB1 22
   Nocardia crassostreae OB3  
  221/183 Sulfobacillus disulfidooxidans SD-11 12
   Kitasatospora paracochleata 14769  
   Kitasatospora melanogena JCM 3337  
   Kitasatospora kifuense JCM 9081  
  236/138 Leuconostoc citreum NCDO 2787 7
   Leuconostoc lactis ATCC 19256  
   Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  
  388/210 Oxalobacter formigenes BLISS 12
  390/211 Pseudomonas sp. B13 11
MNL-FAM × MNL-JOE 134/93 Clostridium perfringens CPN50 2