Name
|
Sequence 5'-3'
|
TM/FAa
|
Positionb
|
Reference
|
---|
CteA1-for
|
CGAAAAGCCTGGGGCTAATAT
|
58°C
|
449-469
|
this study
|
CteA1-rev
|
CCATCTCTGGTAAGTTCCTGC
|
60°C
|
1019-999
|
this study
|
CteA2-for
|
TTGACATGGCAGGAACTTACC
|
58°C
|
991-1011
|
this study
|
CteA2-rev
|
TCCCATTAGAGTGCTCAACTG
|
58°C
|
1157-1136
|
this study
|
341F
|
CCTACGGGAGGCAGCAG
|
60°C
|
341-356
|
[14]
|
534R
|
ATTACCGCGGCTGCTGGC
|
60°C
|
534-517
|
[14]
|
27F
|
AGAGTTTGATCATGGCTCAG
|
55°C
|
8-27
|
[35]
|
1492R
|
GGTTACCTTGTTACGACTT
|
53°C
|
1510-1492
|
[35]
|
CteA
|
CATGACCCGGGGATATTAGC
|
30%
|
481-462
|
this study
|
Eub338
|
GCTGCCTCCCGTAGGAGT
|
30%
|
355-338
|
[38]
|
Eub338-II
|
GCAGCCACCCGTAGGTGT
|
30%
|
355-338
|
[39]
|
Eub338-III
|
GCTGCCACCCGTAGGTGT
|
30%
|
355-338
|
[39]
|
- a Melting temperature for PCR primers or formamide concentrations for FISH probes, respectively
- b Position on the E. coli 16S rRNA sequence