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Table 1 The Clostridium perfringens type A isolates used in this study

From: Genetic diversity of Clostridium perfringens type A isolates from animals, food poisoning outbreaks and sludge

Isolate

Description (Genotype)

Reference strains

 

CCUG 1795 (A)

C. perfringens typestrain, type A (ATCC 13124)

CIP 106526 (A)b

C. perfringens reference strain, type A

CCUG 2035 (B)a

C. perfringens reference strain, type B

CCUG 2036 (C)b

C. perfringens reference strain, type C

CCUG 2037 (D)

C. perfringens reference strain, type D

CCUG 44727 (E)a

C. perfringens reference strain, type E

Poultry, Sweden

 

AN 4208/00

Cholangiohepatitis, broiler

AN 4209/00

Cholangiohepatitis, broiler

AN 4354/00

Cholangiohepatitis, broiler

AN 4355/00

Cholangiohepatitis, broiler

AN 4361/00

Cholangiohepatitis, broiler (cpb2)

AN 4362/00

Cholangiohepatitis, broiler (cpb2)

AN 4738/00

Necrotic enteritis, layer

AN 4739/00

Necrotic enteritis, layer

AN 4744/00a

Necrotic enteritis, layer

AN 4745/00

Necrotic enteritis, layer

AN 4746/00

Necrotic enteritis, layer

AN 4947/00

Necrotic enteritis, broiler

AN 4948/00

Necrotic enteritis, broiler

AN 4961/00

Cholangiohepatitis, broiler

AN 4962/00

Cholangiohepatitis, broiler

AN 4965/00

Healthy, layer

AN 4966/00

Healthy, broiler

AN 4967/00

Healthy, broiler

AN 4989/00

Cholangiohepatitis, broiler

AN 4990/00

Cholangiohepatitis, broiler

Horse, Sweden

 

AN 740/94

Healthy (cpe)

AN 836/94

Healthy

AN 100/95c

1 day post antibiotic treatment with erythromycin (cpb2)

AN 108/95c

4 days post antibiotic treatment with erythromycin (cpb2)

AN 110/95a,c

7 days post antibiotic treatment with erythromycin (cpb2)

AN 238/00

Diarrhoea (cpb2)

AN 2081/01

Diarrhoea

AN 5036/01

Diarrhoea (cpb2)

AN 1480/02

Diarrhoea (cpb2)

AN 187/02

Diarrhoea

Pig, Sweden

 

AN 838/02

Enteritis (cpb2)

AN 933/02

Enteritis (cpb2)

AN 1172/02

Enteritis (cpb2)

AN 1174/02

Enteritis (cpb2)

AN 1175/02

Enteritis (cpb2)

AN 1205/02a

Enteritis (cpb2)

AN 1303/02

Acute Enteritis (cpb2)

AN 1518/02

Acute Enteritis

AN 1543/02

Acute enteritis (cpb2)

AN 1544/02

Trauma head

AN 1580/02

Enteritis (cpb2)

AN 1581/02

Acute enteritis (cpb2)

Sheep, Sweden

 

AN 1486/03

Enteritis (cpb2)

AN 1628/03

Acute haemorrhagic inflammation

AN 1647/03

Enteritis (cpb2)

AN 1694/03

Enteritis

AN 2101/03

Dead animal

AN 2679/02b

Enteritis (cpb2)

Roedeer, Sweden

 

AN 3495/96b

Enteritis

AN 3496/96b

Enteritis

AN 3499/96b

Enteritis

AN 287/98

Enteritis

AN 2990/99a

Enteritis

AN 4081/99b

Enteritis

AN 4487/99

Enteritis

AN 30/00

Enteritis

AN 87/00

Enteritis

AN 351/00

Dead roedeer

AN 248/00

Enteritis (cpe)

AN 2226/02

Dead roedeer

Wild birds, Sweden

 

AN 782/00

Enteritis, Buzzard

AN 3340/00

Enteritis, Herring gull

AN 2679/03

Enteritis Mallard

AN 2709/03

Enteritis and botulism, Mallard

AN 2858/03

Enteritis Herring gull

AN 3016/03

Entertoxaemia, Mallard

Sludge, Sweden

 

B22a

Waste water treatment plant

B23

Waste water treatment plant

B24

Waste water treatment plant

B26a,b

Waste water treatment plant

B29b

Waste water treatment plant (cpb2)

B32

Waste water treatment plant

B33

Waste water treatment plant (cpb2)

B34a,b

Waste water treatment plant (cpb2)

B37b

Waste water treatment plant (cpb2)

B39

Waste water treatment plant

B40

Waste water treatment plant

B42

Waste water treatment plant

B44

Waste water treatment plant

B45

Waste water treatment plant

Food

 

1176/98d

Norwegian outbreak 3, Meat stew (cpe)

1177/98d

Norwegian outbreak 3, Meat stew (cpe)

1178/98d

Norwegian outbreak 3, Meat stew (cpe)

455/99a,d

Norwegian outbreak 4, Chicken stew (cpe)

186/01d

Norwegian outbreak 2, Wild meat stew (cpb2, cpe)

1509/03b,d

Norwegian outbreak 1, Meat stew (cpb2, cpe)

1508/03b,d

Norwegian outbreak 1, Meat stew (cpb2, cpe)

AN 4279/01a

Swedish outbreak 1, meat soup

AN 4280/01

Swedish outbreak 1, meat soup

AN 4281/01

Swedish outbreak 1, meat soup

AN 4282/01

Swedish outbreak 1, meat soup

  1. a Used for sequencing of the 16S rRNA genes
  2. b DNA degraded by endogenous endonucleases
  3. c Isolated from horse no. 5 in the study by Gustafsson et al. [40].
  4. d Kindly provided by Prof. P.E Granum, Norwegian School of Veterinary Science, Oslo, Norway