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Table 2 ST, PFGE and MLVA genotypes for 100 N. meningitidis isolates.

From: Use of a multilocus variable-number tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates

Strain code

Year of Isolation

Serogroup

ST codea

PFGE codea

MLVA code

MLVA allelic profileb (NMTR1, 2, 6, 7, 9, 9a, 9b, 9c, 10, 12, 18, 19)

ST-5 complex/Subgroup III

   NM77

2001

A

ST-7

NMEN06.0065

TW59

27, 14, 2, 3, 6, 1, 2, 4, 4, 22, 2, 2

   NM320

2002

A

ST-7

NMEN06.0066

TW48

21, 17, 2, 3, 6, 1, 2, 4, 4, 23, 2, 2

ST-11 complex/ET-37 complex

   MS4527

1996

W135

ST-11

NMEN06.0056

TW87

47, 8, 4, 11, 33, 2, 1, 3, 4, 6, 6, 5

   NM6

1996

W135

ST-11

NMEN06.0056

TW76

37, 8, 4, 12, 37, 3, 1, 3, 4, 24, 6, 5

   NM7

1996

W135

ST-11

NMEN06.0056

TW90

58, 8, 4, 17, 34, 2, 1, 3, 4, 6, 6, 5

   NM19

1997

W135

ST-11

NMEN06.0056

TW92

33(34), 7, 4, 11, 33, 3, 1, 3, 4, 24, 6, 5

   NM24

1998

W135

ST-11

NMEN06.0056

TW74

36, 7, 4, 15, 32, 3, 1, 3, 4, 24, 6, 5

   2002-060

2001

W135

ST-11

NMEN06.0056

TW36

16, 7, 4, 10, 23, 3, 1, 3, 4, 24, 6, 5

   NM163

2001

W135

ST-11

NMEN06.0056

TW93

41(42), 8, 4, 9, 34, 3, 1, 3, 4, 25, 6, 5

   NM21125

2001

W135

ST-11

NMEN06.0056

TW77

37, 9, 4, 12, 32, 3, 1, 3, 4, 24, 6, 5

   NM64

2001

W135

ST-11

NMEN06.0056

TW79

38, 6, 4, 12, 35, 3, 1, 3, 4, 24, 6, 5

   NM66

2001

W135

ST-11

NMEN06.0056

TW58

27, 6, 4, 15, 39, 3, 1, 3, 4, 24, 6, 5

   NM76

2001

W135

ST-11

NMEN06.0056

TW83

39, 8, 4, 18, 34, 3, 1, 3, 4, 25, 6, 5

   NM79

2001

W135

ST-11

NMEN06.0056

TW72

35, 10, 4, 12, 32, 3, 1, 3, 4, 24, 6, 5

   NM80

2001

W135

ST-11

NMEN06.0056

TW57

27, 5, 4, 10, 37, 3, 1, 3, 4, 24, 6, 5

   2002-059

2002

W135

ST-11

NMEN06.0056

TW78

38, 5, 4, 12, 36, 3, 1, 3, 4, 16, 6, 5

   NM181

2002

W135

ST-11

NMEN06.0056

TW81

38, 9, 4, 11, 29, 3, 1, 3, 4, 24, 6, 5

   NM25845

2002

W135

ST-11

NMEN06.0056

TW84

42, 6, 4, 21, 34, 3, 1, 3, 4, 23, 6, 5

   NM293

2002

W135

ST-11

NMEN06.0056

TW66

32, 9, 4, 12, 36, 3, 1, 3, 4, 24, 6, 5

   NM321

2002

W135

ST-11

NMEN06.0056

TW67

34, 9, 4, 12, 36, 3, 1, 3, 4, 24, 6, 5

   NM5

1996

W135

ST-11

NMEN06.0056

TW70

35, 6, 4, 10, 37, 3, 1, 3, 4, 24, 6, 5

   NM12

1997

W135

ST-11

NMEN06.0057

TW80

38, 6, 4, 14, 37, 3, 1, 3, 4, 24, 6, 5

   NM14

1997

W135

ST-11

NMEN06.0057

TW91

59, 7, 4, 15, 34, 2, 1, 3, 4, 6, 6, 5

   NM4967

1997

W135

ST-11

NMEN06.0057

TW75

37, 6, 4, 15, 38, 3, 1, 3, 4, 24, 6, 5

   NM19172

2000

W135

ST-11

NMEN06.0057

TW61

28, 5, 4, 13, 38, 3, 1, 3, 4, 24, 6, 5

   NM102

2001

W135

ST-11

NMEN06.0057

TW14

10, 10, 4, 9, 19(27), 3, 1, 3, 4, 24, 6, 5

   NM152

2001

W135

ST-11

NMEN06.0057

TW82

39, 5, 4, 16, 37, 3, 1, 3, 4, 24, 6, 5

   NM357

2002

W135

ST-11

NMEN06.0057

TW65

30, 7, 5, 25, 35, 3, 1, 3, 4, 24, 7, 5

   NM60

2001

W135

ST-11

NMEN06.0059

TW71

35, 8, 4, 27, 35, 3, 1, 3, 4, 25, 6, 6

   NM68

2001

W135

ST-11

NMEN06.0059

TW86

43, 7, 4, 10(11), 25, 3, 1, 3, 4, 24, 3, 6

   NM257

2002

W135

ST-11

NMEN06.0059

TW88

49, 6, 4, 13, 24, 3, 1, 3, 4, 24, 3(6), 7

   NM81

2001

C

ST-11

NMEN06.0067

TW25

11, 5, 4, 16, 27, 3, 1, 2, 4, 21, 6, 4

   NM377

2002

C

ST-11

NMEN06.0068

TW52

24, 6, 4, 13, 24, 3, 1, 2, 4, 18, 4, 5

   NM378

2002

C

ST-11

NMEN06.0068

TW52

24, 6, 4, 13, 24, 3, 1, 2, 4, 18, 4, 5

   NM25

1998

W135

ST-3016

NMEN06.0058

TW51

23, 7, 4, 9, 32, 2, 1, 3, 4, 6, 6, 5

   NM18972

2000

W135

ST-3016

NMEN06.0058

TW51

23, 7, 4, 9, 32, 2, 1, 3, 4, 6, 6, 5

ST-23 complex/Cluster A3

   NM21468

2001

Y

ST-23

NMEN06.0060

TW3

4, 18, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM22034

2001

Y

ST-23

NMEN06.0060

TW3

4, 18, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM82

2001

Y

ST-23

NMEN06.0060

TW3

4, 18, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM25569

2002

Y

ST-23

NMEN06.0060

TW7

4, 18, 5, 6, 9, 1, 2, 2, 11, 24, 2, 2

   NM267

2002

Y

ST-23

NMEN06.0060

TW5

4, 19, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM28225

2002

Y

ST-23

NMEN06.0060

TW5

4, 19, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM100

2001

Y

ST-23

NMEN06.0061

TW6

4, 20, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM153

2001

Y

ST-23

NMEN06.0061

TW8

4, 15, 5, 7, 10, 1, 2, 2, 11, 24, 2, 2

   NM21519

2001

Y

ST-23

NMEN06.0061

TW4

4, 21, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM21675

2001

Y

ST-23

NMEN06.0061

TW4

4, 21, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

   NM25238

2001

Y

ST-23

NMEN06.0061

TW11

5, 23, 5, 7, 9, 1, 2, 2, 11, 24, 2, 2

ST-32 complex/ET-5 complex

   NM159

2001

B

ST-3465

NMEN06.0042

TW39

17, 8, 2, 12, 12, 1, 2, 3, 9, 26, 2, 3

ST-41/44 complex/Lineage 3

   NM21700

2001

B

ST-41

NMEN06.0002

TW85

40, 4, 2, 18, 10, 1, 1, 3, 4, 3, 2, 3

   NM25135

2001

B

ST-41

NMEN06.0002

TW89

58, 4, 2, 11, 10, 1, 1, 3, 4, 4, 2, 3

   2002-075

2002

B

ST-41

NMEN06.0002

TW18

10, 4, 2, 8, 10, 1, 1, 3, 4, 4, 2, 3

   NM30607

2002

B

ST-41

NMEN06.0002

TW73

36, 4, 2, 10, 13, 1, 1, 3, 4, 4, 3, 3

   NM20

1997

B

ST-41

NMEN06.0003

TW23

11, 5, 2, 7, 12, 1, 1, 3, 4, 4, 2, 3

   NM39

1999

B

ST-41

NMEN06.0004

TW37

16, 8, 2, 12, 12, 1, 1, 3, 4, 3, 2, 3

   NM25614

2002

B

ST-41

NMEN06.0046

TW34

15, 6, 2, 7, 12, 1, 1, 3, 4, 4, 2, 4

   NM295

2002

B

ST-41

NMEN06.0046

TW33

15, 6, 2, 8, 12, 1, 1, 3, 4, 4, 2, 4

   NM9

1996

B

ST-41

NMEN06.0047

TW17

10, 5, 2, 7, 14, 1, 1, 3, 4, 4, 2, 3

   NM84

2001

B

ST-41

NMEN06.0047

TW38

17, 7, 2, 10, 12, 1, 1, 3, 4, 4, 2, 4

   NM40

1999

B

ST-41

NMEN06.0090

TW41

18, 5, 2, 15, 16, 1, 1, 3, 4, 4, 2, 3

   NM21261

2001

B

ST-154

NMEN06.0001

TW31

14, 8, 2, 11, 10, 1, 1, 3, 4, 3, 2, 3

   NM24481

2001

B

ST-154

NMEN06.0001

TW46

20, 9, 2, 11, 10, 1, 1, 3, 4, 3, 2, 3

   NM8

1996

B

ST-437

NMEN06.0025

TW63

28, 15, 2, 11, 9, 1, 1, 3, 8, 4, 3, 2

   NM18

1997

B

ST-437

NMEN06.0044

TW55

26, 13, 2, 9, 8, 1, 1, 3, 8, 4, 3, 2

   NM32

1998

B

ST-3466

NMEN06.0031

TW27

12, 6, 5, 8, 3, 1, 1, 3, 8, 4, 3, 2

   Hua443

2002

B

ST-3468

NMEN06.0048

TW2

0, 16, 3, 15, 16, 1, 3, 3, 10, 3, 3, 3

   2002-061

2002

B

ST-3468

NMEN06.0049

TW1

0, 14, 3, 14, 16, 1, 3, 3, 9, 3, 3, 3

ST-162 complex

   NM420

2002

B

ST-162

NMEN06.0037

TW42

18, 7, 2, 8, 13, 1, 2, 3, 25, 10, 3, 2

ST-865 complex

   NM15

1997

B

ST-865

NMEN06.0029

TW64

29, 21, 2, 7, 22, 1, 1, 2, 10, 0, 2, 2

   NM272

2002

B

ST-865

NMEN06.0030

TW56

26, 14, 2, 10, 21, 1, 1, 2, 11, 0, 2, 2

ST-3129 group

   NM2

1996

B

ST-3129

NMEN06.0020

TW40

17, 13, 2, 8, 34, 1, 1, 2, 11, 8, 3, 2

   NM13

1997

B

ST-3129

NMEN06.0027

TW69

34, 12, 4, 8, 16, 1, 1, 2, 10, 7, 3, 2

ST-3200 group

   NM21435

2001

B

ST-3200

NMEN06.0005

TW53

25, 11, 3, 8, 16, 1, 1, 3, 8, 3, 2, 2

   NM71

2001

B

ST-3200

NMEN06.0007

TW28

13, 11, 3, 10, 15, 2, 1, 3, 8, 3, 2, 2

   NM30

1998

B

ST-3200

NMEN06.0010

TW50

22, 8, 3, 17, 15, 2, 1, 3, 8, 3, 2, 2

   NM88

2001

B

ST-3200

NMEN06.0010

TW35

15, 13, 3, 13, 13, 2, 1, 3, 8, 3, 2, 2

   NM397

2002

B

ST-3200

NMEN06.0010

TW49

22, 6, 3, 5, 12, 2, 1, 3, 8, 3, 2, 2

   NM10

1996

B

ST-3200

NMEN06.0012

TW44

19, 8, 3, 13, 10, 2, 1, 3, 8, 3, 2, 2

   NM255

2002

B

ST-3441

NMEN06.0010

TW62

28, 8, 3, 10, 16, 2, 1, 3, 8, 3, 2, 2

   NM256

2002

B

ST-3441

NMEN06.0010

TW62

28, 8, 3, 10, 16, 2, 1, 3, 8, 3, 2, 2

   NM21992

2001

B

ST-3469

NMEN06.0006

TW45

19, 7, 3, 9, 12, 2, 1, 3, 8, 3, 2, 2

   NM30088

2002

B

ST-3470

NMEN06.0013

TW13

8, 8, 3, 10, 9, 2, 1, 3, 8, 3, 2, 2

   NM390

2002

B

ST-3503

NMEN06.0014

TW21

10, 9, 3, 8, 9, 2, 1, 3, 8, 3, 2, 2

   NM26447

2002

B

ST-4836

NMEN06.0010

TW68

34, 11, 3, 15, 13, 2, 1, 3, 8, 4, 2, 2

ST-3439 group

   NM62

2001

B

ST-1393

NMEN06.0093

TW10

5, 34, 3, 13, 17, 1, 1, 3, 14, 5, 3, 2

   NM16

1997

B

ST-3192

NMEN06.0023

TW16

10, 22, 3, 13, 14, 1, 1, 3, 15, 4, 3, 2

   NM30397

2002

B

ST-3192

NMEN06.0024

TW22

10, 24, 3, 7, 16, 1, 1, 3, 14, 4, 3, 2

   NM383

2002

B

ST-3192

NMEN06.0024

TW19

10, 20, 3, 13, 16, 1, 1, 2, 14, 4, 3, 2

   NM21

1997

B

ST-3192

NMEN06.0091

TW20

10, 16, 3, 14, 15, 1, 1, 3, 14, 4, 3, 2

   NM22

1997

B

ST-3192

NMEN06.0092

TW24

11, 21, 3, 10, 14, 1, 1, 3, 14, 4, 3, 2

   Nm15656

1999

B

ST-3439

NMEN06.0016

TW9

5, 20, 3, 7, 14, 1, 1, 3, 15, 4, 3, 2

   NM38

1999

B

ST-3439

NMEN06.0017

TW30

14, 20, 3, 13, 15, 1, 1, 3, 15, 4, 3, 2

   NM37

1999

B

ST-3439

NMEN06.0089

TW15

10, 17, 3, 10, 13, 1, 1, 3, 18, 4, 3, 2

   NM4

1996

B

ST-3440

NMEN06.0022

TW29

13, 16, 3, 10, 13, 1, 1, 3, 16, 4, 3, 2

   NM22208

2001

B

ST-3442

NMEN06.0015

TW12

5, 30, 3, 10, 19, 1, 1, 3, 19, 4, 3, 2

Single clonal lineage

   NM3

1996

B

ST-3175

NMEN06.0021

TW26

11, 15, 4, 7, 9, 1, 2, 3, 11, 31, 2, 2

   NM28

1998

B

ST-3196

NMEN06.0036

TW54

26, 9, 5, 21, 24, 1, 1, 3, 33, 9, 3, 2

   NM90

2001

NT

ST-3366

NMEN06.0069

TW32

14, 4, 2, 7, 6, 1, 1, 3, 16, 8, 3, 2

   NM15252

1999

B

ST-3437

NMEN06.0019

TW47

20, 13, 2, 14, 7, 1, 1, 3, 8, 17, 2, 2

   NM25660

2002

B

ST-3438

NMEN06.0018

TW43

18, 19, 2, 18, 12, 1, 2, 3, 16, 7, 2, 2

   NM412

2002

B

ST-3504

NMEN06.0050

TW60

27, 20, 2, 15, 15, 4, 2, 2, 10, 0, 2, 2

  1. aCharacterized previously [9].
  2. b Number in parentheses indicates the second copy of the locus. The second allele indicated in the parentheses was ignored in the MST analysis.
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