ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms

BMC Microbiology

Table 2 Extragenic regions upstream genes encoding AcrR similar proteins

	regulator ID	Gene Name	genome	Extra. region length
1	NP_414997	acrR	Escherichia coli K12	141
2	NP_706357	acrR	Shigella flexneri 2a str. 301	141
3	NP_752516	acrR	Escherichia coli CFT073	105
4	NP_836135	acrR	Shigella flexneri 2a str. 2457T	141
5	NP_286205	acrR	Escherichia coli O157:H7 EDL933	141
6	NP_308544	acrR	Escherichia coli O157:H7	141
7	NP_455074	acrR	Salmonella enterica subsp. enterica serovar Typhi str. CT18	141
8	NP_806113	acrR	Salmonella enterica subsp. enterica serovar Typhi Ty2	141
9	NP_459472	acrR	Salmonella typhimur ium LT2	141
10	YP_151443	acrR	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150	141
11	NP_668381	acrR	Yersinia pestis KIM	144
12	NP_992188	acrR2	Yersinia pestis biovar Medievalis str. 91001	144
13	NP_406606	acrR	Yersinia pestis CO92	144
14	YP_069526	acrR	Yersinia pseudotuberculosis IP 32953	143
15	YP_049277	acrR	Erwinia carotovora subsp. atroseptica SCRI1043	165
16	NP_ 931055	acrR	Photorhabdus luminescens subsp. laumondii TTO1	129
17	NP_794058	PSPTO4302	Pseudomonas syringae pv. tomato str.DC3000	254

This table contains some data extracted from the entries corresponding to the extragenic regions that participate in the case study.

ISSN: 1471-2180