From: Molecular targets for rapid identification of Brucella spp
 |  |  |  | B. suis | B. melitensis | B. abortus | |||
---|---|---|---|---|---|---|---|---|---|
# | CDS Name | Function | Amplicon Size (bp) | Predicted | Observed | Predicted | Observed | Predicted | Observed |
A. | B. suis Chromosome I (S1) | ||||||||
1 | BR0952 | putative amino acid ABC transporter, permease protein | 396 | + | + | - | - | - | - |
2 | BR0953 | putative amino acid ABC transporter, permease protein | 438 | + | + | - | - | - | - |
3 | BR0954 | hypothetical protein | 153 | + | + | - | - | - | - |
4 | BR1846 | hypothetical protein | 721 S 469 M | + | + | + | + | - | - |
B. | B. suis Chromosome II (S2) | ||||||||
5 | BRA0362 | putative site-specific recombinase, phage integrase family | 722 | + | + | - | - | - | - |
6 | BRA0363 | putative DNA-binding protein | 148 | + | + | - | - | - | - |
7 | BRA0364 | putative RepA-related protein | 655 | + | + | - | - | - | - |
8 | BRA0365 | hypothetical protein | 167 | + | + | - | - | - | - |
9 | BRA0366 | putative TrbL protein | 170 | + | + | - | - | - | - |
10 | BRA0367 | putative TrbL protein | 119 | + | + | - | - | - | - |
11 | BRA0368 | putative TrbJ protein | 354 | + | + | - | - | - | - |
12 | BRA0369 | hypothetical protein | 123 | + | + | - | - | - | - |
13 | BRA0370 | hypothetical protein | 121 | + | + | - | - | - | - |
14 | BRA0371 | putative TraC protein | 140 | + | + | - | - | - | - |
15 | BRA0372 | putative TraJ protein | 218 | + | + | - | - | - | - |
16 | BRA0373 | putative TraI protein | 173 | + | - | - | - | - | - |
17 | BRA0374 | hypothetical protein | 768 | + | + | - | - | - | - |
18 | BRA0375 | hypothetical protein | 648 | + | + | - | - | - | - |
19 | BRA0376 | hypothetical protein | 532 | + | + | - | - | - | - |
20 | BRA0377 | conserved hypothetical protein | 867 | + | + | - | - | - | - |
21 | BRA0378 | hypothetical protein | 191 | + | + | - | - | - | - |
22 | BRA0379 | putative DNA-damage-inducible protein J | 119 | + | + | - | - | - | - |
C. | B. melitensis Chromosome I (M1) | ||||||||
23 | BMEI1661 | recombinase | 218 | - | - | + | + | - | - |
D. | B. abortus | ||||||||
24 | 6 kb Partial differential, primer pair 1 | Â | 782 | - | - | - | - | + | + |
25 | 6 kb Partial differential, primer pair 2 | Â | 613 M 1142 S 4484 A | + | - | + | - | + | - |
E. | B. suis and B. melitensis Chromosome I (SM1) | ||||||||
26 | BR1060/BMEI0926/ | putative HlyD family secretion protein/multidrug resistance protein A | 207 | - | - | + | + | - | - |
27 | BR1057/BMEI0929 | Diguanylate cyclase/phosphodiesterase domain/putative GGDEF domain protein | 323 | + | + | + | + | - | - |
F. | B. suis and B. melitensis Chromosome II (SM2) | ||||||||
28 | BRA0227/BMEII1016 | putative ThiJ/PfpI family protein/protease I | 466 | + | + | + | - | - | - |
29 | BRA0418/BMEII0849 | putative fucose synthetase family protein/GDP-4-dehydro-D-rhamnose reductase | 363 | + | + | + | - | - | - |
30 | BRA0419/BMEII0848 | putative GDP-mannose 4,6-dehydratase Bme9/GDP-mannose 4,6-dehydratase | 239 | + | - | + | + | - | - |
31 | BRA0420/BMEII0847 | putative glycosyltransferase/glycosyl transferase | 657 | + | + | + | - | - | - |
32 | BRA0421/BMEII0846 | putative glycosyltransferase, group 1 family protein/glycosyl transferase | 229 | + | - | + | - | - | - |
33 | BRA0422/BMEII0845 | putative glycosyltransferase, group 1 family protein/: lipopolysaccharide N-acetylglucosaminyltransferase | 470 S 398 M | + | + | + | - | - | - |
34 | BRA0423/BMEII0844 | putative outer membrane protein, 31 kDa/31 kDa outer-membrane immunogenic protein precursor | 317 | + | + | + | + | - | - |
35 | BRA0424/BMEII0843 | putative acetyltransferase, CysE/LacA/LpxA/NodL family/putative colanic acid biosynthesis acetyltransferase WCAF | 366 | + | - | + | - | - | - |
36 | BRA0425/BMEII0842 | putative membrane protein Bme3/hypothetical protein | 774 | + | - | + | - | - | - |
37 | BRA0426/BMEII0841 | putative Bme2 protein/hypothetical protein | 286 | + | - | + | + | - | - |
38 | BRA0427/BMEII0840 | putative glycosyl transferase, group 2 family protein/glycosyltransferase involved in cell wall biogenesis | 279 | + | + | - | - | - | - |
39 | BRA0428/BMEII0839 | putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase | 672 | + | + | + | - | - | - |
40 | BRA0429/BMEII0838 | putative polysaccharide biosynthesis protein/succinoglycan biosynthesis transport protein exot | 306 | + | - | + | - | - | - |
41 | BRA0430/BMEII0837 | putative glycosyltransferase, group 2 family protein/glycosyltransferase | 488 | + | - | + | - | - | - |
42 | BRA0431/BMEII0836 | conserved hypothetical protein/dTDP-4-dehydrorhamnose 3,5-epimerase | 281 | + | - | + | - | - | - |
43 | BRA0432/BMEII0835 | putative glycosyltransferase, group 1 family protein/glycosyltransferase | 223 S 708 M | + | + | + | + | - | - |
44 | BRA0433/BMEII0834 | putative glutamate-1-semialdehyde-2,1-aminomutase/glutamate-1-semialdehyde 2,1-aminomutase | 463 | + | + | + | - | - | - |
45 | BRA0434/BMEII0833 | putative conserved hypothetical protein/hypothetical protein | 239 | + | + | + | - | - | - |
46 | BRA0435/BMEII0832 | putative epimerase/dehydratase family protein/UDP-glucose 4-epimerase | 642 | + | + | + | - | - | - |
47 | BRA0436/BMEII0831 | conserved hypothetical protein/hypothetical protein | 188 | + | + | + | + | - | - |
48 | BRA0437/BMEII0830 | putative dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose 3,5-epimerase dTDP-4-dehydrorhamnose reductase | 285 | + | + | + | - | - | - |
49 | BRA0438/BMEII0828 | putative methyltransferase/possible s-adenosylmethionine-dependent methyltransferase | 452 | + | + | + | - | - | - |
50 | BRA0438/BMEII0829 | putative methyltransferase/possible s-adenosylmethionine-dependent methyltransferase | 155 | + | - | + | - | - | - |
51 | BRA0439/BMEII0827 | putative nucleotidyltransferase family protein/glucose-1-phosphate cytidylyltransferase | 525 | + | + | + | + | - | - |
52 | BRA0553/BMEII0717 | putative cell wall surface protein/hemagglutinin | 421 | + | + | + | - | - | - |
G. | B. suis and B. abortus Chromosome I (SA1) | ||||||||
53 | BR0221/BruAb1_0216 | putative transcriptional regulator, MerR family | 91 | + | + | - | - | + | + |
54 | BR0389/BruAb1_0414 | hypothetical protein | 141 | + | - | - | - | + | + |
55 | BR0390/Not annotated | hypothetical protein | 74 | + | - | - | - | - | - |
56 | BR0588/BruAb1_0609 | putative protease | 665 | + | - | - | - | + | + |
57 | BR0589/BruAb1_0610 | major capsid protein, HK97 family/putative protein | 303 | + | - | - | - | + | + |
58 | BR0590/BruAb1_0611 | conserved hypothetical protein | 71 | + | - | - | - | + | + |
59 | BR0591/BruAb1_0612 | conserved hypothetical protein | 139 | + | - | - | - | + | - |
60 | BR0592 BruAb1_0613 | hypothetical protein | 91 | + | - | - | - | + | - |
61 | BR0593/BruAb1_0613 | conserved hypothetical protein | 208 | + | + | - | - | + | - |
62 | BR1852/BruAb1_1831 | transcriptional regulator, Cro/CI family, | 194 | + | - | - | - | + | + |
63 | BR1853/BruAb1_1832 | putative AzlC family protein | 610 | + | + | - | - | + | + |
H. | B. suis and B. abortus Chromosome II (SA2) | ||||||||
64 | BRA0541/BruAb2_0681 | hypothetical protein | 118 | + | - | - | - | + | - |
65 | BRA0630/BruAb2_0596 | putative amino acid dehydrogenase | 736 | + | + | - | - | + | + |
66 | BRA0631/BruAb2_0595 | putative amino acid ABC transporter, periplasmic amino acid-binding protein | 202 | + | - | - | - | + | - |
67 | BRA0632/BruAb2_0594 | putative amino acid ABC transporter, periplasmic amino acid-binding protein | 321 | + | + | - | - | + | - |
68 | BRA0633/BruAb2_0593 | conserved hypothetical protein | 591 | + | + | - | - | + | + |
69 | BRA0634/BruAb2_0592 | putative transcriptional regulator, AsnC family | 276 | + | - | - | - | + | - |
70 | BRA0635/BruAb2_0591 | putative twin-arginine translocation signal domain protein | 998 | + | + | - | - | + | + |
71 | BRA0636/BruAb2_0590 | putative beta-ketoadipyl CoA thiolase | 635 | + | + | - | - | + | - |
72 | BRA0749/BruAb2_0483 | putative sugar ABC transporter, permease protein | 310 | + | + | - | - | + | + |
73 | BRA0907/BruAb2_0326 | conserved hypothetical protein | 825 | + | - | - | - | + | + |
74 | BRA1096/BruAb2_1035 | putative transcriptional regulator | 393 | + | + | - | - | + | + |
I. | B. melitensis and B. abortus Chromosome I (MA1) | ||||||||
75 | BMEI0900/BruAb1_1088 | hypothetical protein | 212 | - | - | + | + | + | - |
76 | BMEI1674/BruAb1_0274 | hypothetical protein | 597 | - | - | + | + | + | + |
77 | BMEI1675 BruAb1_0273 | hypothetical protein | 157 | - | - | + | + | + | + |
78 | BMEI1676/BruAb1_0271 | hypothetical protein | 206 | - | - | + | - | + | + |
79 | BMEI1977/BruAb1_0270 | hypothetical protein | 400 | - | - | + | + | + | + |
80 | BMEI1978/BruAb1_0269 | hypothetical protein | 192 | - | - | + | + | + | + |
81 | BMEI1979/BruAb1_0268 | hypothetical protein | 201 | - | - | + | + | + | + |
82 | BMEI1980/BruAb1_0267 | hypothetical protein | 210 | - | - | + | + | + | + |
83 | BMEI1981/BruAb1_0266 | hypothetical protein | 358 | - | - | + | + | + | + |
84 | BMEI1982/BruAb1_0265 | hypothetical protein | 418 | - | - | + | + | + | + |
85 | BMEI1683/BruAb1_0264 | zinc-dependent metallopeptidase | 482 | - | - | + | + | + | + |
86 | BMEI1684/BruAb1_0263 | hypothetical protein | 149 | - | - | + | - | + | - |
87 | BMEI1685/BruAb1_0262 | hypothetical protein | 163 | - | - | + | - | + | - |
88 | BMEI1686/BruAb1_0261 | hypothetical protein | 265 | - | - | + | + | + | + |
89 | BMEI1687/BruAb1_0260 | hypothetical protein | 167 | - | - | + | + | + | + |
90 | BMEI1688/BruAb1_0259 | hypothetical protein | 431 | - | - | + | - | + | - |
91 | BMEI1689/BruAb1_0258 | hypothetical protein | 271 | - | - | + | + | + | + |
92 | BMEI1690/BruAb1_0257 | hypothetical protein | 160 | - | - | + | - | + | + |
93 | BMEI1691/BruAb1_0256 | hypothetical membrane spanning protein | 206 | - | - | + | - | + | - |
94 | BMEI1692/BruAb1_0255 | flagellar protein FlgJ | 201 | - | - | + | - | + | - |
95 | BMEI1693/BruAb1_0254 | hypothetical protein | 151 | - | - | + | + | + | + |
96 | BMEI1694/BruAb1_0253 | hypothetical protein | 150 | - | - | + | - | + | + |
97 | BMEI1695/BruAb1_0252 | hypothetical protein | 239 | - | - | + | + | + | + |
98 | BMEI1696/BruAb1_0251 | hypothetical membrane spanning protein | 526 | - | - | + | + | + | + |
99 | BMEI1697/BruAb1_0250 | virulence-associated protein E | 857 | - | - | + | + | + | + |
100 | BMEI1698/BruAb1_0249 | hypothetical protein | 245 | - | - | + | + | + | + |
101 | BMEI1699/BruAb1_0248 | hypothetical protein | 183 | - | - | + | + | + | + |
102 | BMEI1700/BruAb1_0247 | hypothetical protein | 207 | - | - | + | + | + | + |
103 | BMEI1701/BruAb1_0246 | hypothetical protein | 221 | - | - | + | + | + | + |
104 | BMEI1702/BruAb1_0245 | transposase | 169 | - | - | + | - | + | - |