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Table 4 Theoretical patterns of restriction digestion of the three 16S-23S intergenic spacers in some species of Weissella

From: Identification to the species level of Lactobacillus isolated in probiotic prospecting studies of human, animal or food origin by 16S-23S rRNA restriction profiling

 

Sph I

Nco I

Nhe I

Ssp I

Sfu I

Eco RV

Dra I

Vsp I

Hinc II

Eco RI

Hind III

W. viridescens

           

   longa

-

-

-

-

-

-

+

+

-

-

+

   mediumb

-

+

-

-

-

-

+

+

-

-

+

   short

-

-

-

-

-

-

+

+

-

-

+

W. kimchii

           

   long

-

-

-

+

-

-

+

-

+

-

+

   medium

-

+

-

+

-

-

+

-

+

-

+

   shortc

           

W. kandleri

           

   longc

           

   medium

-

-

-

+

-

-

+

-

+

-

+

   short

-

-

-

+

-

-

+

+

-

-

+

W. confusa

           

   long

-

-

-

+

-

-

+

-

-

-

+

   medium

-

-

-

+

-

-

+

-

-

-

+

   short

-

-

-

+

-

-

+

-

-

-

+

W. minor

           

   long

-

-

-

+

-

-

+

-

-

-

+

   medium

-

-

-

+

-

-

+

-

-

-

+

   shortc

           

W. thailandensis

           

   long

-

-

-

-

+

-

+

-

-

-

+

   medium

-

-

-

-

+

-

+

-

-

+

+

   short

-

-

-

-

-

-

+

-

-

+

+

W. paramesenteroides

           

   long

-

-

-

-

+

-

+

-

-

-

-

   medium

-

-

-

-

+

-

+

-

-

+

-

   short

-

-

-

-

-

-

+

-

-

-

-

  1. atRNA-Ile and tRNA-Ala genes inserted
  2. btRNA-Ala gene inserted
  3. cSequences not found in GenBank database