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Table 4 Homologous regions of e14 with other phage and bacterial genomes. Regions of similarity of e14 with other genomes. All the regions indicated show greater than 85% identity in the region of the match. The matching regions in e14 are ordered based on position in the e14 genome. Figure 1 provides a schematic representation of this table.

From: Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome

Organism

Region

e14 Region

Correspond e14 protein

S. flexneri phage V

24627–25019

4859–5249

ymfI

 

25540–27256

5903–9926

ymfK, ymfL, ymfM

 

1156–2211

8192–9247

ymfN

 

15305–16983

9926–11604

ymfO, ycfK

S. typhimurium phage ST64B

27440–27600

5031–5190

ymfI

 

29587–29625

7544–7582

ymfL

 

1140–1405

8228–8493

ymfN

 

1608–2840

8696–9928

ymfN

E. coli CFT073

38985–38623

4859–5220

ymfI

 

37962–37900

5900–5963

-

 

36862–36316

7035–7581

ymfL

 

36307–35709

7596–8194

ymfM

E. coli O157:H7

153052–153211

6–165

icd

 

25330–25963

11395–14028

pin

 

23421–23500

11517–11596

ycfK

 

24611–24263

12232–12580

ymfS, tfaA

S. flexneri 2a str. 301

1197399–1197608

7–216

icd

 

325210–325530

11604–11284

ycfk

 

921146–921257

13459–13570

pin

 

2684817–2685390

14032–13459

pin

Bacteriophage HK97

20864–20264

12256–12856

ymfS, tfaA

 

19918–19709

13205–13414

pin

Bacteriophage p27

22957–23180

8225–8448

ymfN

 

23410–23498

8678–8766

ymfN

 

23764–23883

9035–9154

ymfN

 

23735–23883

9006–9154

ymfN

 

23941–24443

9212–9714

ymfR, ymfO

Plasmid p15B (X62121)

3853–3216

12324–12961

tfaA, stfE (-)

 

3890–4390

12918–13415

stfE

 

6180–6377

13218–13415

stfE

 

4700–4880

13211–13415

stfE

 

2998–2803

13215–13410

stfE

 

5203–5418

13200–13415

stfE

 

5701–5905

13211–13415

stfE

 

6438–6879

13476–13917

Pin

S. enterica serovar Typhi Ty2

3525667–3526015

12581–12233

tfaA, stfE

 

3526698–3527201

13396–13898

stfE, pin

 

3524880–3525072

13410–13218

stfE

 

2754201–2754696

13898–13404

stfE, pin

 

1410749–1410959

13205–13415

stfE

 

1411306–1411507

13218–13419

stfE

 

1408359–1408791

13908–13476

Pin

 

1409336–1409551

13415–13200

stfE

 

1408852–1409071

13415–13196

stfE