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Table 2 Predicted promoters for the e14 element. Putative promoters predicted using BPROM available at the website http://www.softberry.com. Scores are as given by BPROM. Promoters with a score above 3 were considered for the study. Only those promoters which could be associated with some gene are listed. Promoter for the shorter ORF of b1146 was predicted based on Allison et al. [31] and GeneMark program and hence is omitted from the table.

From: Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome

Position

Strand

-10 box

-35 box

Score

Gene

    

-10

-35

Overall

 

2070

-

gtatataat

ttgtaa

72

47

9.24

ymfE, ymfD

2461

+

gtatatact

ctgaag

62

19

6.95

lit

6003

-

ttttatact

tttatg

76

33

8.09

ymfJ

6919

-

cacaaaact

ttgctc

17

31

3.24

ymfK

6800

+

atgtaatat

ttgaag

61

54

3.5

ymfL

13200

+

acttaaaat

ttgcat

67

50

4.68

pinE

14113

+

aagtagtat

ttgcaa

44

55

5.55

mcrA