From: Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome
Name | Blattner number | Location | Protein length (orientation) | %G+C | Domain architecture and features | Function/similarity (Expression) |
---|---|---|---|---|---|---|
YmfD | b1137 | 659–1324 | 221 (-) | 0.35 | IPR001601 | Very weak match to Methyltranferase and tellurite resistance TehB (l+) |
YmfE | b1138 | 1325–2029 | 234 (-) | 0.31 | TM(22–42, 59–79, 154–174, 186–206) | (l+) |
Lit | b1139 | 2487–3380 | 297 (+) | 0.37 | PS00142 TM (61–82, 149–178) | T4 exclusion, Interacts with DNA, is a protease (l+) |
IntE | b1140 | 3471–4598 | 375 (-) | 0.45 | IPR002104, PF00589 | phage integrase (l+) |
Vxis | b1141 | 4579–4824 | 81 (-) | 0.44 | - | phage excisionase (l+) |
YmfH | b1142 | 4861–5172 | 103 (-) | 0.54 | TM(42–62, 73–93) | similar to Q8FET3 of E. coli O6 (l+) |
YmfI | b1143 | 5289–5630 | 113 (+) | 0.39 | - | (l+) |
YmfJ | b1144 | 5568–5852 | 94 (-) | 0.47 | - | similar to Zinc finger protein Q8BGS3 (l+) |
YmfK | b1145 | 6051–6725 | 224 (-) | 0.44 | IPR006198, PF00717 | cI/c2 repressor (l+) |
b1146 | b1146 | 6513–7016 | 167 (+) | - | - | probable homolog of cro from Shigella flexneri (+) |
YmfL | b1147 | 7048–7617 | 189 (+) | 0.49 | - | - |
YmfM | b1148 | 7614–7952 | 112 (+) | 0.50 | - | - |
YmfN | b1149 | 7962–9329 | 455(+) | 0.54 | IPR005021, PF03354, COG4626, SM00345 | Fusion of a replicase and a phage terminase |
YmfR | b1150 | 9341–9523 | 60 (+) | 0.60 | TM(5–25, 26–46) | - |
YmfO | b1151 | 9523–9934 | 137 (+) | 0.56 | IPR006944, PF04860 | Probable pseudogene, phage portal |
YmfP | b1152 | 9935–10714 | 259 (+) | 0.58 | - | tail protein (baseplate?) |
YmfQ | b1153 | 10705–11289 | 194 (+) | 0.57 | SS(1–32) | tail protein (baseplate?) |
YcfK | b1154 | 11293–11922 | 209 (+) | 0.50 | COG3299 | tail fibre |
YmfS | b1155 | 11924–12337 | 137 (+) | 0.42 | PF02413, IPR003458 | tail fibre assembly |
TfaE | b1156 | 12309–12911 | 200 (-) | 0.48 | PF02413, IPR003458 | tail fibre assembly |
StfE | b1157 | 12911–13411 | 166 (-) | 0.47 | - | side tail fibre |
PinE | b1158 | 13477–14031 | 184 (+) | 0.49 | PF00239, PF02796, PS00397, PS00398 | DNA invertase – catalyses the inversion of 1800 bp P-region (+) |
McrA | b1159 | 14138–14971 | 277 (+) | 0.38 | SM00507, IPR002711, IPR003615 | Modified cytosine restriction endonuclease A (+) |