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Table 2 Synthetic oligonucleotides used in this study.

From: The outer membrane protein Omp35 affects the reduction of Fe(III), nitrate, and fumarate by Shewanella oneidensis MR-1

Name

Oligonucleotide sequencea

Oligonucleotides based on omp35

 

O1

5'-TGCTCGAG GGGCGGGTAAACGTAAACTCA-3'

O2

5'-TGCTCGAG CATGGCGCCTCACCTACCT-3'

O3

5'-ATTGCGATCGAT ATAACCGTTGGCGATCTT-3'

O4

5'-ATTGCGATCGAT TAACAAAGGTATTGCGGGTAT-3'

O5

5'-TTTAGAGAAGCGGTAGTCAGC-3'

O6

5'-ATCGCCAACGGTTATGAT-3'

O7

5'-ACGCCATATCGAGTTTACAT-3'

Oligonucleotide based on Km r gene

 

K1

5'-ATTGCGATCGAT TTATGCTTGTAAACCGTT-3'

Oligonucleotides based on cat gene

 

C1

5'-CAGACGGCATGATGAACCTGAATC-3'

C2

5'-CCACCGTTGATATATCCCAATGGC-3'

  1. aThe underlined regions indicate the following restriction endonuclease sites engineered into the oligonucleotides: Xho I sites in O1 and O2 and Cla I sites in O3, O4, and K1.