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Table 2 Main characteristics and behavior of the 25 tandem repeat loci

From: Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis

locus

alias

repeat size (bp)

nb of alleles*

allele size range (units)

allele size range (bp)

polymorphism index*

ms01

 

18

6

6–11

192–282

0.61

ms04

M58

17

5(6)

5–9

179–247

0.71 (0.78)

ms05

M59

17

3(4)

10–12

274–308

0.45 (0.68)

ms06

 

60

10

3–11

306–786

0.73

ms07

M37

10

4(5)

7–10

164–194

0.65 (0.72)

ms09

 

18

7

5–36

178–736

0.48

ms15

 

15

2

9–10

222–237

0.29

ms20

M51

15

3(2)

7.5–9

230–253

0.42 (0.49)

ms21

 

18

4

6–11

224–314

0.18

ms35

 

15

2

8–9

204–219

0.35

ms38

 

16

4

5–8

185–233

0.42

ms40

 

17

3

7–9

214–248

0.38

ms41

 

17

3

5–7

183–217

0.38

ms44

 

17

2

7–8

233–250

0.23

ms45

M42

12

3(2)

6–8

149–173

0.37 (0.18)

ms46

 

17

9

6.5–14.5

243–380

0.71

ms51

 

18

2

6–7

182–200

0.12

ms54

 

22

2

6–7

259–281

0.09

ms56

 

16

4

6–11

204–284

0.35

ms62

M34

9

13(11)

5–20

222–357

0.88 (0.81)

ms69

 

16

3

5–7

163–195

0.47

ms70

 

9

7

3–11

119–191

0.62

ms71

 

14

4

4–7

143–185

0.45

ms73

 

18

3

3–6

171–225

0.3

ms74

 

15

4

5–8

175–220

0.41

  1. *the values reported in [9] are indicated in brackets.