From: Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis
locus | alias | repeat size (bp) | nb of alleles* | allele size range (units) | allele size range (bp) | polymorphism index* |
---|---|---|---|---|---|---|
ms01 | 18 | 6 | 6–11 | 192–282 | 0.61 | |
ms04 | M58 | 17 | 5(6) | 5–9 | 179–247 | 0.71 (0.78) |
ms05 | M59 | 17 | 3(4) | 10–12 | 274–308 | 0.45 (0.68) |
ms06 | 60 | 10 | 3–11 | 306–786 | 0.73 | |
ms07 | M37 | 10 | 4(5) | 7–10 | 164–194 | 0.65 (0.72) |
ms09 | 18 | 7 | 5–36 | 178–736 | 0.48 | |
ms15 | 15 | 2 | 9–10 | 222–237 | 0.29 | |
ms20 | M51 | 15 | 3(2) | 7.5–9 | 230–253 | 0.42 (0.49) |
ms21 | 18 | 4 | 6–11 | 224–314 | 0.18 | |
ms35 | 15 | 2 | 8–9 | 204–219 | 0.35 | |
ms38 | 16 | 4 | 5–8 | 185–233 | 0.42 | |
ms40 | 17 | 3 | 7–9 | 214–248 | 0.38 | |
ms41 | 17 | 3 | 5–7 | 183–217 | 0.38 | |
ms44 | 17 | 2 | 7–8 | 233–250 | 0.23 | |
ms45 | M42 | 12 | 3(2) | 6–8 | 149–173 | 0.37 (0.18) |
ms46 | 17 | 9 | 6.5–14.5 | 243–380 | 0.71 | |
ms51 | 18 | 2 | 6–7 | 182–200 | 0.12 | |
ms54 | 22 | 2 | 6–7 | 259–281 | 0.09 | |
ms56 | 16 | 4 | 6–11 | 204–284 | 0.35 | |
ms62 | M34 | 9 | 13(11) | 5–20 | 222–357 | 0.88 (0.81) |
ms69 | 16 | 3 | 5–7 | 163–195 | 0.47 | |
ms70 | 9 | 7 | 3–11 | 119–191 | 0.62 | |
ms71 | 14 | 4 | 4–7 | 143–185 | 0.45 | |
ms73 | 18 | 3 | 3–6 | 171–225 | 0.3 | |
ms74 | 15 | 4 | 5–8 | 175–220 | 0.41 |