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Table 1 List of the Yersinia pestis isolates used for genotyping

From: Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis

Isolates

Number of isolates

Geographical origin

Biovar

CEB-O-1 to CEB-O-132

132

Vietnam

orientalis

CEB-O-133 and O-134

2

Burma

orientalis

M23, Java9, Java10, TS

4

Indonesia

orientalis

Exu21, Exu38

2

Brazil

orientalis

195P, CEB-O-135 and CEB-O-136

3

India

orientalis

K120

1

SAF

orientalis

EV26, EV76(and 3 replicates), 6/69 (and 2 replicates)

3

Madagascar

orientalis

TW, Yp1255

2

 

orientalis

GB

1

UK (laboratory)

orientalis

G32, C0-92

2

USA

orientalis

IP523, IP524

2

Senegal

orientalis

Turkey 10/1

1

Turkey

orientalis

CEB-O-137 to CEB-O-139

3

unknown

orientalis

CEB-M-1 to CEB-M-5, PKH4, PKR25, KIM (and 5 replicates)

8

Kurdistan

medievalis

CEB-M-6 and CEB-M-7

2

unknown

medievalis*

KUMA

1

Mandchouria

antiqua

Yokohama

1

Japan

antiqua

5761, 735

2

Russia

antiqua

IP543, 343

2

Congo

antiqua

IP537, A22, 129M22

3

Kenya

antiqua

Turkey 10/5, Turkey 10/3

2

Turkey

antiqua

8786G

1

Georgia

pestoides

  1. *deletion in napA