|
Species
|
Genbank Number
|
Hha I
|
Mbo I
|
Rsa I
|
Bst UI
|
Reference strains useda
|
|---|
|
M. tuberculosis complex
|
X52917
|
1
|
1
|
1
|
1
|
ITG 8021, IPB 92/0805
|
|
M. conspicuum
|
X88922
|
1'
|
1
|
2
|
2
| |
|
M. intracellulare
|
X52927
|
1'
|
2
|
2
|
3
|
ITG 5913, ITG 5917
|
|
M. gastri
|
X52919
|
1'
|
4
|
1
|
1
| |
|
M. kansasii
|
M29575
|
1'
|
4
|
1
|
1
|
ITG 8201
|
|
M. bohemicum
|
AJ277283
|
1'
|
4
|
1
|
3
| |
|
M. haemophilum
|
U06638
|
1'
|
4
|
1
|
3
|
ITG 3065
|
|
M. malmoense
|
AF152560
|
1'
|
4
|
1
|
3
|
ITG 940611
|
|
M. szulgai
|
X52926
|
1'
|
4
|
2
|
1
|
ITG 4981
|
|
M. scrofulaceum
|
X52924
|
1'
|
4
|
2
|
3
|
ITG 4988
|
|
M. xenopi
|
X52929
|
1'
|
4
|
3
|
2
|
ITG 4986
|
|
M. heckeshornense
|
AF174290
|
1'
|
4
|
3
|
4
| |
|
M. marinum
|
AF251565
|
2
|
1
|
1
|
1
|
ITG 1728
|
|
M. asiaticum
|
M29556
|
2
|
1
|
2
|
5
|
ITG 8182
|
|
M. terrae
|
X52925
|
2
|
1
|
4
|
2
|
ITG 4922
|
|
M. ulcerans
|
Z13990
|
2
|
1
|
9
|
1
|
ITG 724, ITG 1837
|
|
M. avium
|
AF306455
|
2
|
2
|
2
|
3
|
ITG 4991, ITG 2666
|
|
M. botniense
|
AJ012756
|
2
|
4
|
3
|
2
| |
|
M. terrae-like MCRO6b
|
X93032
|
2
|
6
|
4
|
7
| |
|
M. nonchromogenicum
|
X52928
|
2
|
6
|
4
|
7
|
ITG 4980
|
|
M. phlei
|
M29566
|
3
|
1
|
6
|
2'
| |
|
M. elephantis
|
AJ010747
|
3
|
1
|
8
|
3'
| |
|
M. chelonae group IVc
|
AJ416940
|
3
|
3
|
5
|
2'
|
ITG 7701
|
|
M. abscessus group IIIc
|
AJ419970
|
3
|
3
|
6
|
2'
|
ITG 98-1296
|
|
M. chelonae group 1c
|
AJ419969
|
3
|
3
|
6
|
2'
|
ITG 95-0026
|
|
M. immunogenum
|
AJ011771
|
3
|
3
|
6
|
2'
|
ITG 98-1289
|
|
M. farcinogenes
|
AF055333
|
4
|
1
|
6
|
7
| |
|
M. fortuitum
|
X52933
|
4
|
1
|
6
|
7
|
SLZ A046
|
|
M. senegalense
|
M29567
|
4
|
1
|
6
|
7
| |
|
M. septicum
|
AF111809
|
4
|
1
|
6
|
7
|
ITG 4166
|
|
M. intermedium
|
X67847
|
5
|
4
|
6
|
1'
| |
|
M. interjectum
|
AJ272088
|
5
|
4
|
6
|
2'
|
ITG 96-116
|
|
M. heidelbergense
|
X70960
|
5
|
4
|
8
|
2'
| |
|
M. simiae
|
X52931
|
5
|
7
|
6
|
2'
|
ITG 4485
|
|
M. lentiflavum
|
X80769
|
5
|
7
|
6
|
2'
| |
|
M. peregrinum
d
|
X52921
|
7
|
1
|
6
|
9
|
ITG 99-2069, ATCC 14467
|
|
M. gordonae
|
M29563
|
8
|
4
|
2
|
5
|
ITG 7838
|
|
M. wolinskyi
|
Y12871
|
10
|
1
|
1
|
2'
| |
|
M. species
a
|
AF028712
|
10
|
1
|
1
|
2'
| |
|
M. goodii
|
Y12872
|
10
|
1
|
2
|
2'
| |
|
M. smegmatis
|
AJ131761
|
10
|
1
|
2
|
2'
|
ITG 4995
|
|
M. kubicae
|
AF133902
|
10
|
1
|
6
|
1'
| |
|
M. tusciae
|
AF058299
|
10
|
1
|
6
|
2'
| |
|
M. flavescens
|
X52932
|
10
|
1
|
6
|
2'
|
VUB A016
|
|
M. genavense
|
X60070
|
10
|
7
|
6
|
2'
|
ITG 97-102
|
|
M. triplex
|
U57632
|
10
|
7
|
6
|
2'
| |
|
M. chelonae group IIc
|
AJ419968
|
13
|
3
|
6
|
6
|
ITG 96-0295
|
|
M. branderi
|
X82234
|
14
|
1
|
1
|
9
| |
|
M. celatum
e
|
L08169
|
14
|
1
|
1
|
10
| |
|
M. triviale
|
X88924
|
15
|
1
|
10
|
10'
| |
|
M. aurum
|
X55595
|
16
|
1
|
6
|
8
| |
- a. ITG: Institute for Tropical Medicine, Antwerp, Belgium; IPB: Institute Pasteur du Brabant, Brussels, Belgium; SLZ: Streeklaboratorium Zeeland, Goes, the Netherlands; VUB: Free University of Brussels, Brussels, Belgium. b. Strains designated MCRO6 have been studied by Turenne et al.[22] and Torkko et al.[33]. c. Sequences determined in this study. Roman numbering according to Portaels et al.[16], who distinguished four groups within the M. abscessus/M. chelonae complex, based on the 16S–23S rRNA spacer region. d. The GenBank sequence (AF058712) of strain ATCC 14467, submitted to GenBank as M. peregrinum, did not cluster within the M. fortuitum complex (Figure 8) and was highly similar to sequence Y12871 (M. wolinskyi). Moreover, the ARDRA profile calculated from sequence AF058712 (10-1-1-2') did not correspond with the profile we obtained for strain ATCC 14467 (4-1-6-7). The sequence obtained in this study from strain ATCC 14467 (submitted as AJ422046) was identical to the M. fortuitum sequence X52933. Sequence AF058712 is indicated as M. species in the table. e. Received as M. xenopi.
