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Table 3 Oligonucleotide primer pairs used for PCR and sequencing in this study.

From: Intrastrain and interstrain genetic variation within a paralogous gene family in Chlamydia pneumoniae

ORFa

Region amplified a

5'-3' sequence of primers

Cpn 007

7488–8694

AAGAGTTTTCGCTAT TGACGACTCTTAGATGTTTCG

Cpn 010

13152–13502

GAAAACACCTCTTGTGGCTAG AGACATACCCACGGAATAATAAA

Cpn 010

13175–14431

TACTCGCGAGGACCATACCTAGC AACTCATGGAACGTTATCTCGTCC

Cpn 010.1

15178–16324

GCTTGGATGATTTACGACGAG CTAAGATTTTTTGGGTGGCACG

Cpn 041

55728–56987

GAAAATTCTTTTCGCAGAGATGGA TCCTGTGCTCTTCATAACGCTCAC

Cpn 043

58069–59173

TGCTTTTCAGGCATTCCAGG GCGAGCTACGACCTCTTTAGCGA

Cpn 045

60755–61856

ATTTGAATCGATGGAGATTCCAGA TATCCTGCAGCCATTCTACATCTT

Cpn 1054

1206885–1208142

AAAGGAAGTTTTCTTGAAGATCTT ACTCATGGAACGTTATCTCGTCC

Cpn 1055

1209382–1210530

AGTTCCTGAGATTCCTGAGGC TATCTCCTCAACTACTCGAGATAAC

  1. Open Reading Frame (ORF) designations and region amplified are relative to the numbering in the CWL029 genome sequence available through reference [7].