|
strain id.
|
species
|
24
|
79
|
154
|
577
|
580
|
802
|
959
|
1121
|
1644
|
1955
|
2163
|
2165
|
2347
|
2401
|
2461
|
2531
|
3006
|
3192
|
3663
|
3690
|
4348
|
|---|
|
percy196
|
bcg
|
9
|
11
|
2
|
5
|
3.3
|
2
|
2
|
4
|
3
|
1
|
9
|
5
|
2
|
2
|
5
|
4
|
3
|
3
|
1.7
|
2
|
2
|
|
percy197
|
bcg
|
9
|
11
|
2
|
5
|
3.3
|
2
|
2
|
4
|
3
|
1
|
6
|
5
|
2
|
2
|
5
|
4
|
3
|
3
|
1.7
|
2
|
2
|
|
percy142
|
bcg
|
9
|
11
|
2
|
5
|
3.3
|
2
|
2
|
4
|
3
|
1
|
11
|
5
|
2
|
2
|
5
|
4
|
3
|
3
|
1.7
|
2
|
2
|
|
percy62
|
bcg
|
9
|
11
|
2
|
5
|
3.3
|
2
|
2
|
4
|
3
|
1
|
11
|
5
|
2
|
2
|
5
|
4
|
3
|
3
|
1.7
|
2
|
2
|
|
percy43a
|
bovis
|
9
|
10
|
2
|
5
|
4
|
2
|
2
|
4
|
3
|
1
|
10
|
5
|
3
|
4
|
5
|
4
|
1
|
3
|
1.7
|
2
|
2
|
|
percy53
|
bovis
|
9
|
9
|
2
|
5
|
4
|
2
|
2
|
4
|
3
|
1
|
11
|
5
|
3
|
4
|
2
|
4
|
2
|
5
|
1.7
|
2
|
2
|
|
percy184
|
bovis
|
9
|
8
|
2
|
3
|
4
|
2
|
2
|
4
|
2
|
3
|
6
|
6
|
3
|
4
|
4
|
4
|
3
|
1
|
1.7
|
3
|
2
|
|
percy55
|
bovis
|
9
|
8
|
2
|
5
|
4
|
2
|
2
|
4
|
3
|
3
|
6
|
6
|
3
|
4
|
4
|
4
|
3
|
3
|
1.7
|
3
|
2
|
|
AF2122
|
bovis
|
9
|
7
|
2
|
5
|
5
|
2
|
2
|
4
|
2
|
3
|
10
|
8
|
3
|
4
|
5
|
4
|
3
|
3
|
1.7
| |
2
|
|
percy54
|
bovis
|
9
|
8
|
2
|
5
|
4
|
1
|
2
|
4
|
2
|
3
|
10
|
9
|
3
|
4
|
5
|
4
|
3
|
3
|
1.7
|
2
|
2
|
|
percy61
|
africanum
|
9
|
7
|
2
|
5
|
4
|
2
|
5
|
4
|
2
|
3
|
10
|
4
|
3
|
4
|
4
|
4
|
3
|
5
|
1.7
|
4
|
2
|
|
percy119
|
africanum
|
9
|
8
|
2
|
5
|
3
|
1
|
7
|
4
|
4
|
3
|
10
|
2
|
3
|
4
|
5
|
4
|
3
|
6
|
1.7
|
1
|
2
|
|
percy57
|
africanum
|
9
|
6
|
2
|
5
|
3
|
1
|
10
|
4
|
2
|
4
|
10
|
7
|
3
|
4
|
5
|
4
|
3
|
5
|
1.1
|
5
|
2
|
|
cipt950052
|
africanum
|
9
|
7
|
2
|
5
|
3
|
2
|
4
|
4
|
4
|
4
|
10
|
6
|
2
|
4
|
4
|
4
|
3
|
5
|
1.7
|
3
|
2
|
|
percy18
|
africanum
|
9
|
8
|
2
|
5
|
3
|
2
|
5
|
4
|
4
|
4
|
10
|
6
|
3
|
4
|
4
|
4
|
3
|
5
|
1.7
|
6
|
2
|
|
cipt960340
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
4
|
4
|
2
|
9
|
2
|
3
|
4
|
2
|
4
|
4
|
2
|
1.7
|
4
|
2
|
|
percy59
|
africanum
|
9
|
6
|
2
|
4
|
3
|
1
|
4
|
4
|
4
|
2
|
9
|
3
|
3
|
4
|
2
|
4
|
4
|
2
|
1.7
|
3
|
2
|
|
percy16
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
4
|
3
|
2
|
9
|
4
|
3
|
4
|
2
|
4
|
4
|
2
|
1.7
|
3
|
2
|
|
percy17
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
4
|
4
|
2
|
8
|
4
|
3
|
4
|
2
|
4
|
4
|
2
|
1.7
|
3
|
2
|
|
percy99a
|
africanum
|
9
|
6
|
2
|
2
|
3
|
1
|
4
|
4
|
4
|
2
|
9
|
4
|
3
|
2
|
2
|
4
|
4
|
2
|
1.7
|
1
|
2
|
|
percy13
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
4
|
3
|
2
|
9
|
4
|
3
|
4
|
4
|
4
|
3
|
2
|
1.7
|
2
|
2
|
|
percy58
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
4
|
4
|
2
|
9
|
4
|
3
|
2
|
2
|
4
|
3
|
2
|
1.7
|
4
|
2
|
|
percy56
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
3
|
4
|
2
|
9
|
4
|
3
|
4
|
2
|
2
|
4
|
2
|
1.7
|
3
|
2
|
|
percy60
|
africanum
|
9
|
5
|
2
|
4
|
3
|
1
|
4
|
3
|
4
|
2
|
9
|
4
|
3
|
4
|
2
|
2
|
4
|
2
|
1.7
|
3
|
2
|
|
percy27
|
africanum
|
9
|
9
|
2
|
2
|
3
|
3
|
4
|
3
|
1
|
4
|
10
|
4
|
4
|
2
|
2
|
5
|
3
|
5
|
1.7
|
3
|
3
|
|
percy7
|
africanum
|
9
|
9
|
2
|
2
|
3
|
3
|
4
|
3
|
3
|
4
|
10
|
4
|
4
|
2
|
2
|
5
|
3
|
5
|
1.7
|
3
|
3
|
|
percy91
|
africanum
|
9
|
9
|
2
|
2
|
3
|
3
|
4
|
3
|
3
|
4
|
10
|
4
|
4
|
2
|
2
|
5
|
3
|
4
|
1.7
|
3
|
3
|
|
percy122
|
beijing tuberculosis
|
9
|
6
|
2
|
4
|
3
|
1
|
3
|
4
|
3
|
6
|
11
|
4
|
4
|
4
|
2
|
5
|
1
|
3
|
0.7
|
3
|
2
|
|
cipt20001272
|
beijing tuberculosis
|
9
|
11
|
2
|
4
|
3
|
3
|
3
|
4
|
4
|
5
|
6
|
4
|
4
|
4
|
2
|
5
|
3
|
5
|
0.7
|
3
|
2
|
|
cipt991053
|
beijing tuberculosis
|
9
|
11
|
2
|
4
|
3
|
3
|
2
|
4
|
3
|
5
|
9
|
4
|
4
|
4
|
2
|
5
|
3
|
5
|
0.7
|
3
|
2
|
|
cipt990590
|
beijing tuberculosis
|
9
|
11
|
2
|
4
|
2
|
3
|
2
|
4
|
3
|
5
|
9
|
4
|
4
|
4
|
2
|
3
|
3
|
5
|
0.7
|
3
|
3
|
|
cipt971135
|
beijing tuberculosis
|
9
|
11
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
4
|
9
|
4
|
4
|
4
|
2
|
5
|
3
|
2
|
0.7
|
3
|
3
|
|
percy248
|
tuberculosis
|
9
|
11
|
2
|
4
|
3
|
3
|
3
|
3
|
3
|
1
|
14
|
4
|
4
|
4
|
2
|
5
|
3
|
5
|
0.7
|
3
|
3
|
|
percy164
|
tuberculosis
|
9
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
5
|
10
|
4
|
4
|
4
|
2
|
5
|
3
|
5
|
0.7
|
3
|
3
|
|
percy170
|
tuberculosis
|
9
|
8
|
2
|
4
|
8
|
2
|
6
|
3
|
2
|
5
|
10
|
7
|
3
|
2
|
4
|
5
|
3
|
5
|
1.7
|
4
|
3
|
|
percy211
|
tuberculosis
|
9
|
8
|
2
|
4
|
3
|
3
|
3
|
4
|
2
|
5
|
11
|
7
|
3
|
2
|
4
|
5
|
3
|
5
|
1.7
|
4
|
3
|
|
percy189a
|
tuberculosis
|
9
|
9
|
2
|
4
|
4
|
3
|
4
|
4
|
3
|
6
|
5
|
3
|
3
|
2
|
4
|
4
|
3
|
5
|
1.7
|
7
|
3
|
|
percy128
|
tuberculosis
|
9
|
8
|
2
|
4
|
4
|
4
|
3
|
4
|
3
|
6
|
6
|
6
|
3
|
1
|
1
|
8
|
3
|
6
|
1.7
|
4
|
3
|
|
percy210
|
tuberculosis
|
9
|
8
|
2
|
4
|
6
|
4
|
4
|
4
|
3
|
7
|
24
|
7
|
3
|
1
|
1
|
6
|
3
|
4
|
1.7
|
4
|
3
|
|
percy172
|
tuberculosis
|
9
|
10
|
2
|
3
|
3
|
3
|
4
|
5
|
3
|
3
|
10
|
3
|
4
|
4
|
2
|
5
|
3
|
4
|
1.7
|
3
|
2
|
|
percy231
|
tuberculosis
|
9
|
10
|
2
|
3
|
3
|
2
|
4
|
4
|
3
|
3
|
11
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
CDC1551
|
tuberculosis
|
9
|
7
|
2
|
3
|
3
|
5
|
5
|
5
|
3
|
3
|
7
|
2
|
3
|
4
|
2
|
5
|
3
|
3
|
1.7
| |
2
|
|
percy155
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
2
|
10
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy44
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
2
|
8
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy216
|
tuberculosis
|
8
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
2
|
7
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy6b
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
4
|
5
|
4
|
3
|
4
|
7
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy239
|
tuberculosis
|
9
|
8
|
2
|
4
|
3
|
2
|
5
|
5
|
3
|
2
|
24
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy208
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
3
|
11
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
5
|
2
|
|
percy232
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
3
|
11
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy222
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
2
|
3
|
10
|
3
|
4
|
4
|
2
|
5
|
4
|
3
|
1.7
|
3
|
2
|
|
percy237
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
3
|
6
|
2
|
2
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy42
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
2
|
5
|
4
|
3
|
3
|
4
|
3
|
3
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy27b
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
6
|
3
|
4
|
3
|
4
|
7
|
3
|
4
|
4
|
2
|
5
|
3
|
3
|
1.7
|
3
|
3
|
|
percy28b
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
6
|
3
|
4
|
3
|
4
|
7
|
3
|
4
|
4
|
2
|
5
|
3
|
4
|
1.7
|
3
|
3
|
|
percy169
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
2
|
5
|
3
|
2
|
2
|
2
|
3
|
3
|
3
|
1.7
|
3
|
2
|
|
percy228
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
3
|
24
|
3
|
2
|
4
|
2
|
3
|
3
|
3
|
1.7
|
3
|
2
|
|
percy219
|
tuberculosis
|
9
|
9
|
2
|
3
|
3
|
3
|
5
|
4
|
3
|
2
|
9
|
3
|
2
|
4
|
2
|
3
|
3
|
3
|
1.7
|
6
|
2
|
|
percy84
|
tuberculosis
|
9
|
8
|
2
|
3
|
3
|
3
|
4
|
4
|
2
|
2
|
11
|
3
|
2
|
4
|
2
|
3
|
3
|
3
|
1.7
|
3
|
2
|
|
percy256
|
tuberculosis
|
9
|
6
|
1
|
4
|
5
|
3
|
7
|
4
|
4
|
4
|
12
|
3
|
4
|
2
|
3
|
4
|
3
|
3
|
1.7
|
1
|
2
|
|
percy259
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
2
|
1
|
5
|
3
|
1
|
26
|
3
|
2
|
2
|
3
|
5
|
1
|
2
|
1.7
|
3
|
1
|
|
percy11
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
4
|
5
|
3
|
3
|
1.7
|
2
|
2
|
|
percy43b
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
1
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
20
|
2
|
|
percy31
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
2
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
17
|
2
|
|
percy18b
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy201
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy35
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy39
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy250
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
2
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy40
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
3
|
6
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
| |
2
|
|
percy33
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
3
|
2
|
25
|
4
|
4
|
2
|
2
|
5
|
3
|
5
|
1.7
|
4
|
2
|
|
percy20
|
tuberculosis
|
10
|
6
|
3
|
4
|
4
|
2
|
3
|
4
|
3
|
1
|
4
|
4
|
4
|
2
|
2
|
5
|
3
|
2
|
1.7
|
3
|
2
|
|
percy16b
|
tuberculosis
|
10
|
6
|
2
|
3
|
3
|
3
|
3
|
4
|
3
|
3
|
24
|
3
|
4
|
2
|
1.7
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy234
|
tuberculosis
|
10
|
6
|
2
|
3
|
3
|
3
|
3
|
4
|
3
|
3
|
25
|
3
|
4
|
2
|
1.7
|
5
|
3
|
3
|
1.7
|
2
|
2
|
|
percy37
|
tuberculosis
|
10
|
6
|
2
|
5
|
3
|
3
|
3
|
4
|
4
|
3
|
24
|
3
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
4
|
2
|
|
percy249
|
tuberculosis
|
10
|
6
| |
4
|
3
|
3
|
3
|
4
|
2
|
3
|
25
|
4
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
2
|
2
|
|
percy7b
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
2
|
3
|
25
|
3
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
9
|
2
|
|
percy41
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
4
|
3
|
4
|
2
|
3
|
25
|
3
|
4
|
2
|
3
|
5
|
3
|
3
|
1.7
|
10
|
2
|
|
percy165
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
3
|
3
|
4
|
2
|
2
|
10
|
3
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy230
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
4
|
2
|
4
|
2
|
2
|
6
|
3
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy245
|
tuberculosis
|
10
|
6
|
2
|
2
|
3
|
2
|
2
|
4
|
2
|
2
|
11
|
3
|
4
|
2
|
2
|
5
|
3
|
3
|
1.7
|
3
|
2
|
|
percy220
|
tuberculosis
|
8
|
5
|
2
|
4
|
3
|
2
|
2
|
4
|
2
|
2
|
24
|
2
|
4
|
2
|
2
|
5
|
3
|
3
|
2.7
|
3
|
2
|
|
percy215
|
tuberculosis
|
10
|
6
|
2
|
3
|
3
|
2
|
3
|
4
|
2
|
2
|
5
|
2
|
4
|
2
|
2
|
5
|
3
|
3
|
2.7
|
3
|
2
|
|
percy33b
|
tuberculosis
|
10
|
6
|
2
|
3
|
3
|
2
|
3
|
4
|
2
|
3
|
6
|
3
|
4
|
2
|
2
|
5
|
3
|
2
|
1.7
|
3
|
2
|
|
percy238
|
tuberculosis
|
10
|
6
|
2
|
3
|
3
|
2
|
3
|
4
|
1
|
2
|
6
|
3
|
4
|
2
|
2
|
1
|
3
|
4
|
3.1
|
3
|
2
|
|
percy217
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
4
|
3
|
4
|
3
|
2
|
24
|
3
|
4
|
2
|
2
|
6
|
3
|
4
|
2.7
|
3
|
2
|
|
percy29b
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
4
|
3
|
4
|
3
|
1
|
25
|
3
|
4
|
2
|
2
|
5
|
3
|
1
|
2.7
|
3
|
2
|
|
percy240
|
tuberculosis
|
10
|
6
|
2
|
4
|
3
|
4
|
3
|
4
|
1
|
2
|
4
|
2
|
4
|
2
|
2
|
5
|
3
|
3
|
2.7
|
5
|
2
|
|
H37Rv
|
tuberculosis
|
10
|
6
|
2
|
4
|
3.3
|
1
|
3
|
4
|
2
|
2
|
3
|
3
|
4
|
2
|
3
|
6
|
3
|
3
|
2.7
|
5
|
2
|
|
percy221
|
tuberculosis
|
10
|
5
|
2
|
4
|
3
|
1
|
4
|
4
|
2
|
3
|
8
|
2
|
4
|
1
|
1
|
6
|
1
|
4
|
1.1
|
2
|
2
|
|
percy241
|
tuberculosis
|
10
|
5
|
2
|
4
|
3
|
3
|
4
|
4
|
2
|
3
|
6
|
2
|
4
|
2
|
2
|
6
|
3
|
3
|
1.7
|
1
|
2
|
|
percy236
|
tuberculosis
|
7
|
5
|
1
|
4
|
3
|
6
|
3
|
4
|
3
|
3
|
23
|
2
|
4
|
1
|
2
|
6
|
3
|
2
|
1.7
|
1
|
2
|
|
percy244
|
tuberculosis
|
10
|
5
|
1
|
4
|
3
|
4
|
2
|
4
|
3
|
3
|
8
|
2
|
4
|
1
|
2
|
6
|
3
|
2
|
1.7
|
3
|
2
|
- Allele sizes were converted to number of repeats according to the correspondence indicated in Table 1. In some instances, decimal values are used, reflecting the existence of alleles with intermediate size. The markers are named and listed according to their position on the genome (Table 1). The strains are listed according to their position in the clustering analysis (Figure 1). M. tuberculosis CDC1551 and M. bovis AF2122/97 are included based on the predicted allele sizes (Table 1) with the exception of locus H37Rv_3690 (disagreement between observed and expected size for H37Rv at this locus).
