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Table 3 Genotype data for 21 loci and 92 strains (including CDC1551 and AF2122/97)

From: High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing

strain id.

species

24

79

154

577

580

802

959

1121

1644

1955

2163

2165

2347

2401

2461

2531

3006

3192

3663

3690

4348

percy196

bcg

9

11

2

5

3.3

2

2

4

3

1

9

5

2

2

5

4

3

3

1.7

2

2

percy197

bcg

9

11

2

5

3.3

2

2

4

3

1

6

5

2

2

5

4

3

3

1.7

2

2

percy142

bcg

9

11

2

5

3.3

2

2

4

3

1

11

5

2

2

5

4

3

3

1.7

2

2

percy62

bcg

9

11

2

5

3.3

2

2

4

3

1

11

5

2

2

5

4

3

3

1.7

2

2

percy43a

bovis

9

10

2

5

4

2

2

4

3

1

10

5

3

4

5

4

1

3

1.7

2

2

percy53

bovis

9

9

2

5

4

2

2

4

3

1

11

5

3

4

2

4

2

5

1.7

2

2

percy184

bovis

9

8

2

3

4

2

2

4

2

3

6

6

3

4

4

4

3

1

1.7

3

2

percy55

bovis

9

8

2

5

4

2

2

4

3

3

6

6

3

4

4

4

3

3

1.7

3

2

AF2122

bovis

9

7

2

5

5

2

2

4

2

3

10

8

3

4

5

4

3

3

1.7

 

2

percy54

bovis

9

8

2

5

4

1

2

4

2

3

10

9

3

4

5

4

3

3

1.7

2

2

percy61

africanum

9

7

2

5

4

2

5

4

2

3

10

4

3

4

4

4

3

5

1.7

4

2

percy119

africanum

9

8

2

5

3

1

7

4

4

3

10

2

3

4

5

4

3

6

1.7

1

2

percy57

africanum

9

6

2

5

3

1

10

4

2

4

10

7

3

4

5

4

3

5

1.1

5

2

cipt950052

africanum

9

7

2

5

3

2

4

4

4

4

10

6

2

4

4

4

3

5

1.7

3

2

percy18

africanum

9

8

2

5

3

2

5

4

4

4

10

6

3

4

4

4

3

5

1.7

6

2

cipt960340

africanum

9

5

2

4

3

1

4

4

4

2

9

2

3

4

2

4

4

2

1.7

4

2

percy59

africanum

9

6

2

4

3

1

4

4

4

2

9

3

3

4

2

4

4

2

1.7

3

2

percy16

africanum

9

5

2

4

3

1

4

4

3

2

9

4

3

4

2

4

4

2

1.7

3

2

percy17

africanum

9

5

2

4

3

1

4

4

4

2

8

4

3

4

2

4

4

2

1.7

3

2

percy99a

africanum

9

6

2

2

3

1

4

4

4

2

9

4

3

2

2

4

4

2

1.7

1

2

percy13

africanum

9

5

2

4

3

1

4

4

3

2

9

4

3

4

4

4

3

2

1.7

2

2

percy58

africanum

9

5

2

4

3

1

4

4

4

2

9

4

3

2

2

4

3

2

1.7

4

2

percy56

africanum

9

5

2

4

3

1

4

3

4

2

9

4

3

4

2

2

4

2

1.7

3

2

percy60

africanum

9

5

2

4

3

1

4

3

4

2

9

4

3

4

2

2

4

2

1.7

3

2

percy27

africanum

9

9

2

2

3

3

4

3

1

4

10

4

4

2

2

5

3

5

1.7

3

3

percy7

africanum

9

9

2

2

3

3

4

3

3

4

10

4

4

2

2

5

3

5

1.7

3

3

percy91

africanum

9

9

2

2

3

3

4

3

3

4

10

4

4

2

2

5

3

4

1.7

3

3

percy122

beijing tuberculosis

9

6

2

4

3

1

3

4

3

6

11

4

4

4

2

5

1

3

0.7

3

2

cipt20001272

beijing tuberculosis

9

11

2

4

3

3

3

4

4

5

6

4

4

4

2

5

3

5

0.7

3

2

cipt991053

beijing tuberculosis

9

11

2

4

3

3

2

4

3

5

9

4

4

4

2

5

3

5

0.7

3

2

cipt990590

beijing tuberculosis

9

11

2

4

2

3

2

4

3

5

9

4

4

4

2

3

3

5

0.7

3

3

cipt971135

beijing tuberculosis

9

11

2

4

3

3

3

4

3

4

9

4

4

4

2

5

3

2

0.7

3

3

percy248

tuberculosis

9

11

2

4

3

3

3

3

3

1

14

4

4

4

2

5

3

5

0.7

3

3

percy164

tuberculosis

9

6

2

4

3

3

3

4

3

5

10

4

4

4

2

5

3

5

0.7

3

3

percy170

tuberculosis

9

8

2

4

8

2

6

3

2

5

10

7

3

2

4

5

3

5

1.7

4

3

percy211

tuberculosis

9

8

2

4

3

3

3

4

2

5

11

7

3

2

4

5

3

5

1.7

4

3

percy189a

tuberculosis

9

9

2

4

4

3

4

4

3

6

5

3

3

2

4

4

3

5

1.7

7

3

percy128

tuberculosis

9

8

2

4

4

4

3

4

3

6

6

6

3

1

1

8

3

6

1.7

4

3

percy210

tuberculosis

9

8

2

4

6

4

4

4

3

7

24

7

3

1

1

6

3

4

1.7

4

3

percy172

tuberculosis

9

10

2

3

3

3

4

5

3

3

10

3

4

4

2

5

3

4

1.7

3

2

percy231

tuberculosis

9

10

2

3

3

2

4

4

3

3

11

3

4

4

2

5

3

3

1.7

3

2

CDC1551

tuberculosis

9

7

2

3

3

5

5

5

3

3

7

2

3

4

2

5

3

3

1.7

 

2

percy155

tuberculosis

9

8

2

3

3

3

5

4

3

2

10

3

4

4

2

5

3

3

1.7

3

2

percy44

tuberculosis

9

8

2

3

3

3

5

4

3

2

8

3

4

4

2

5

3

3

1.7

3

2

percy216

tuberculosis

8

8

2

3

3

3

5

4

3

2

7

3

4

4

2

5

3

3

1.7

3

2

percy6b

tuberculosis

9

8

2

3

3

4

5

4

3

4

7

3

4

4

2

5

3

3

1.7

3

2

percy239

tuberculosis

9

8

2

4

3

2

5

5

3

2

24

3

4

4

2

5

3

3

1.7

3

2

percy208

tuberculosis

9

8

2

3

3

3

5

4

3

3

11

3

4

4

2

5

3

3

1.7

5

2

percy232

tuberculosis

9

8

2

3

3

3

5

4

3

3

11

3

4

4

2

5

3

3

1.7

3

2

percy222

tuberculosis

9

8

2

3

3

3

5

4

2

3

10

3

4

4

2

5

4

3

1.7

3

2

percy237

tuberculosis

9

8

2

3

3

3

5

4

3

3

6

2

2

4

2

5

3

3

1.7

3

2

percy42

tuberculosis

9

8

2

3

3

2

5

4

3

3

4

3

3

4

2

5

3

3

1.7

3

2

percy27b

tuberculosis

9

8

2

3

3

6

3

4

3

4

7

3

4

4

2

5

3

3

1.7

3

3

percy28b

tuberculosis

9

8

2

3

3

6

3

4

3

4

7

3

4

4

2

5

3

4

1.7

3

3

percy169

tuberculosis

9

8

2

3

3

3

5

4

3

2

5

3

2

2

2

3

3

3

1.7

3

2

percy228

tuberculosis

9

8

2

3

3

3

5

4

3

3

24

3

2

4

2

3

3

3

1.7

3

2

percy219

tuberculosis

9

9

2

3

3

3

5

4

3

2

9

3

2

4

2

3

3

3

1.7

6

2

percy84

tuberculosis

9

8

2

3

3

3

4

4

2

2

11

3

2

4

2

3

3

3

1.7

3

2

percy256

tuberculosis

9

6

1

4

5

3

7

4

4

4

12

3

4

2

3

4

3

3

1.7

1

2

percy259

tuberculosis

10

6

2

4

3

2

1

5

3

1

26

3

2

2

3

5

1

2

1.7

3

1

percy11

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

4

2

4

5

3

3

1.7

2

2

percy43b

tuberculosis

10

6

2

4

3

1

3

4

3

3

6

4

4

2

2

5

3

3

1.7

20

2

percy31

tuberculosis

10

6

2

4

3

3

3

4

2

3

6

4

4

2

2

5

3

3

1.7

17

2

percy18b

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

4

2

2

5

3

3

1.7

3

2

percy201

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

4

2

2

5

3

3

1.7

3

2

percy35

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

4

2

2

5

3

3

1.7

3

2

percy39

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

4

2

2

5

3

3

1.7

3

2

percy250

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

2

2

2

5

3

3

1.7

3

2

percy40

tuberculosis

10

6

2

4

3

3

3

4

3

3

6

4

4

2

2

5

3

3

1.7

 

2

percy33

tuberculosis

10

6

2

4

3

3

3

4

3

2

25

4

4

2

2

5

3

5

1.7

4

2

percy20

tuberculosis

10

6

3

4

4

2

3

4

3

1

4

4

4

2

2

5

3

2

1.7

3

2

percy16b

tuberculosis

10

6

2

3

3

3

3

4

3

3

24

3

4

2

1.7

5

3

3

1.7

3

2

percy234

tuberculosis

10

6

2

3

3

3

3

4

3

3

25

3

4

2

1.7

5

3

3

1.7

2

2

percy37

tuberculosis

10

6

2

5

3

3

3

4

4

3

24

3

4

2

2

5

3

3

1.7

4

2

percy249

tuberculosis

10

6

 

4

3

3

3

4

2

3

25

4

4

2

2

5

3

3

1.7

2

2

percy7b

tuberculosis

10

6

2

4

3

3

3

4

2

3

25

3

4

2

2

5

3

3

1.7

9

2

percy41

tuberculosis

10

6

2

4

3

4

3

4

2

3

25

3

4

2

3

5

3

3

1.7

10

2

percy165

tuberculosis

10

6

2

4

3

3

3

4

2

2

10

3

4

2

2

5

3

3

1.7

3

2

percy230

tuberculosis

10

6

2

4

3

4

2

4

2

2

6

3

4

2

2

5

3

3

1.7

3

2

percy245

tuberculosis

10

6

2

2

3

2

2

4

2

2

11

3

4

2

2

5

3

3

1.7

3

2

percy220

tuberculosis

8

5

2

4

3

2

2

4

2

2

24

2

4

2

2

5

3

3

2.7

3

2

percy215

tuberculosis

10

6

2

3

3

2

3

4

2

2

5

2

4

2

2

5

3

3

2.7

3

2

percy33b

tuberculosis

10

6

2

3

3

2

3

4

2

3

6

3

4

2

2

5

3

2

1.7

3

2

percy238

tuberculosis

10

6

2

3

3

2

3

4

1

2

6

3

4

2

2

1

3

4

3.1

3

2

percy217

tuberculosis

10

6

2

4

3

4

3

4

3

2

24

3

4

2

2

6

3

4

2.7

3

2

percy29b

tuberculosis

10

6

2

4

3

4

3

4

3

1

25

3

4

2

2

5

3

1

2.7

3

2

percy240

tuberculosis

10

6

2

4

3

4

3

4

1

2

4

2

4

2

2

5

3

3

2.7

5

2

H37Rv

tuberculosis

10

6

2

4

3.3

1

3

4

2

2

3

3

4

2

3

6

3

3

2.7

5

2

percy221

tuberculosis

10

5

2

4

3

1

4

4

2

3

8

2

4

1

1

6

1

4

1.1

2

2

percy241

tuberculosis

10

5

2

4

3

3

4

4

2

3

6

2

4

2

2

6

3

3

1.7

1

2

percy236

tuberculosis

7

5

1

4

3

6

3

4

3

3

23

2

4

1

2

6

3

2

1.7

1

2

percy244

tuberculosis

10

5

1

4

3

4

2

4

3

3

8

2

4

1

2

6

3

2

1.7

3

2

  1. Allele sizes were converted to number of repeats according to the correspondence indicated in Table 1. In some instances, decimal values are used, reflecting the existence of alleles with intermediate size. The markers are named and listed according to their position on the genome (Table 1). The strains are listed according to their position in the clustering analysis (Figure 1). M. tuberculosis CDC1551 and M. bovis AF2122/97 are included based on the predicted allele sizes (Table 1) with the exception of locus H37Rv_3690 (disagreement between observed and expected size for H37Rv at this locus).
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