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Table 3 Genotype data for 21 loci and 92 strains (including CDC1551 and AF2122/97)

From: High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing

strain id. species 24 79 154 577 580 802 959 1121 1644 1955 2163 2165 2347 2401 2461 2531 3006 3192 3663 3690 4348
percy196 bcg 9 11 2 5 3.3 2 2 4 3 1 9 5 2 2 5 4 3 3 1.7 2 2
percy197 bcg 9 11 2 5 3.3 2 2 4 3 1 6 5 2 2 5 4 3 3 1.7 2 2
percy142 bcg 9 11 2 5 3.3 2 2 4 3 1 11 5 2 2 5 4 3 3 1.7 2 2
percy62 bcg 9 11 2 5 3.3 2 2 4 3 1 11 5 2 2 5 4 3 3 1.7 2 2
percy43a bovis 9 10 2 5 4 2 2 4 3 1 10 5 3 4 5 4 1 3 1.7 2 2
percy53 bovis 9 9 2 5 4 2 2 4 3 1 11 5 3 4 2 4 2 5 1.7 2 2
percy184 bovis 9 8 2 3 4 2 2 4 2 3 6 6 3 4 4 4 3 1 1.7 3 2
percy55 bovis 9 8 2 5 4 2 2 4 3 3 6 6 3 4 4 4 3 3 1.7 3 2
AF2122 bovis 9 7 2 5 5 2 2 4 2 3 10 8 3 4 5 4 3 3 1.7   2
percy54 bovis 9 8 2 5 4 1 2 4 2 3 10 9 3 4 5 4 3 3 1.7 2 2
percy61 africanum 9 7 2 5 4 2 5 4 2 3 10 4 3 4 4 4 3 5 1.7 4 2
percy119 africanum 9 8 2 5 3 1 7 4 4 3 10 2 3 4 5 4 3 6 1.7 1 2
percy57 africanum 9 6 2 5 3 1 10 4 2 4 10 7 3 4 5 4 3 5 1.1 5 2
cipt950052 africanum 9 7 2 5 3 2 4 4 4 4 10 6 2 4 4 4 3 5 1.7 3 2
percy18 africanum 9 8 2 5 3 2 5 4 4 4 10 6 3 4 4 4 3 5 1.7 6 2
cipt960340 africanum 9 5 2 4 3 1 4 4 4 2 9 2 3 4 2 4 4 2 1.7 4 2
percy59 africanum 9 6 2 4 3 1 4 4 4 2 9 3 3 4 2 4 4 2 1.7 3 2
percy16 africanum 9 5 2 4 3 1 4 4 3 2 9 4 3 4 2 4 4 2 1.7 3 2
percy17 africanum 9 5 2 4 3 1 4 4 4 2 8 4 3 4 2 4 4 2 1.7 3 2
percy99a africanum 9 6 2 2 3 1 4 4 4 2 9 4 3 2 2 4 4 2 1.7 1 2
percy13 africanum 9 5 2 4 3 1 4 4 3 2 9 4 3 4 4 4 3 2 1.7 2 2
percy58 africanum 9 5 2 4 3 1 4 4 4 2 9 4 3 2 2 4 3 2 1.7 4 2
percy56 africanum 9 5 2 4 3 1 4 3 4 2 9 4 3 4 2 2 4 2 1.7 3 2
percy60 africanum 9 5 2 4 3 1 4 3 4 2 9 4 3 4 2 2 4 2 1.7 3 2
percy27 africanum 9 9 2 2 3 3 4 3 1 4 10 4 4 2 2 5 3 5 1.7 3 3
percy7 africanum 9 9 2 2 3 3 4 3 3 4 10 4 4 2 2 5 3 5 1.7 3 3
percy91 africanum 9 9 2 2 3 3 4 3 3 4 10 4 4 2 2 5 3 4 1.7 3 3
percy122 beijing tuberculosis 9 6 2 4 3 1 3 4 3 6 11 4 4 4 2 5 1 3 0.7 3 2
cipt20001272 beijing tuberculosis 9 11 2 4 3 3 3 4 4 5 6 4 4 4 2 5 3 5 0.7 3 2
cipt991053 beijing tuberculosis 9 11 2 4 3 3 2 4 3 5 9 4 4 4 2 5 3 5 0.7 3 2
cipt990590 beijing tuberculosis 9 11 2 4 2 3 2 4 3 5 9 4 4 4 2 3 3 5 0.7 3 3
cipt971135 beijing tuberculosis 9 11 2 4 3 3 3 4 3 4 9 4 4 4 2 5 3 2 0.7 3 3
percy248 tuberculosis 9 11 2 4 3 3 3 3 3 1 14 4 4 4 2 5 3 5 0.7 3 3
percy164 tuberculosis 9 6 2 4 3 3 3 4 3 5 10 4 4 4 2 5 3 5 0.7 3 3
percy170 tuberculosis 9 8 2 4 8 2 6 3 2 5 10 7 3 2 4 5 3 5 1.7 4 3
percy211 tuberculosis 9 8 2 4 3 3 3 4 2 5 11 7 3 2 4 5 3 5 1.7 4 3
percy189a tuberculosis 9 9 2 4 4 3 4 4 3 6 5 3 3 2 4 4 3 5 1.7 7 3
percy128 tuberculosis 9 8 2 4 4 4 3 4 3 6 6 6 3 1 1 8 3 6 1.7 4 3
percy210 tuberculosis 9 8 2 4 6 4 4 4 3 7 24 7 3 1 1 6 3 4 1.7 4 3
percy172 tuberculosis 9 10 2 3 3 3 4 5 3 3 10 3 4 4 2 5 3 4 1.7 3 2
percy231 tuberculosis 9 10 2 3 3 2 4 4 3 3 11 3 4 4 2 5 3 3 1.7 3 2
CDC1551 tuberculosis 9 7 2 3 3 5 5 5 3 3 7 2 3 4 2 5 3 3 1.7   2
percy155 tuberculosis 9 8 2 3 3 3 5 4 3 2 10 3 4 4 2 5 3 3 1.7 3 2
percy44 tuberculosis 9 8 2 3 3 3 5 4 3 2 8 3 4 4 2 5 3 3 1.7 3 2
percy216 tuberculosis 8 8 2 3 3 3 5 4 3 2 7 3 4 4 2 5 3 3 1.7 3 2
percy6b tuberculosis 9 8 2 3 3 4 5 4 3 4 7 3 4 4 2 5 3 3 1.7 3 2
percy239 tuberculosis 9 8 2 4 3 2 5 5 3 2 24 3 4 4 2 5 3 3 1.7 3 2
percy208 tuberculosis 9 8 2 3 3 3 5 4 3 3 11 3 4 4 2 5 3 3 1.7 5 2
percy232 tuberculosis 9 8 2 3 3 3 5 4 3 3 11 3 4 4 2 5 3 3 1.7 3 2
percy222 tuberculosis 9 8 2 3 3 3 5 4 2 3 10 3 4 4 2 5 4 3 1.7 3 2
percy237 tuberculosis 9 8 2 3 3 3 5 4 3 3 6 2 2 4 2 5 3 3 1.7 3 2
percy42 tuberculosis 9 8 2 3 3 2 5 4 3 3 4 3 3 4 2 5 3 3 1.7 3 2
percy27b tuberculosis 9 8 2 3 3 6 3 4 3 4 7 3 4 4 2 5 3 3 1.7 3 3
percy28b tuberculosis 9 8 2 3 3 6 3 4 3 4 7 3 4 4 2 5 3 4 1.7 3 3
percy169 tuberculosis 9 8 2 3 3 3 5 4 3 2 5 3 2 2 2 3 3 3 1.7 3 2
percy228 tuberculosis 9 8 2 3 3 3 5 4 3 3 24 3 2 4 2 3 3 3 1.7 3 2
percy219 tuberculosis 9 9 2 3 3 3 5 4 3 2 9 3 2 4 2 3 3 3 1.7 6 2
percy84 tuberculosis 9 8 2 3 3 3 4 4 2 2 11 3 2 4 2 3 3 3 1.7 3 2
percy256 tuberculosis 9 6 1 4 5 3 7 4 4 4 12 3 4 2 3 4 3 3 1.7 1 2
percy259 tuberculosis 10 6 2 4 3 2 1 5 3 1 26 3 2 2 3 5 1 2 1.7 3 1
percy11 tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 4 2 4 5 3 3 1.7 2 2
percy43b tuberculosis 10 6 2 4 3 1 3 4 3 3 6 4 4 2 2 5 3 3 1.7 20 2
percy31 tuberculosis 10 6 2 4 3 3 3 4 2 3 6 4 4 2 2 5 3 3 1.7 17 2
percy18b tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 4 2 2 5 3 3 1.7 3 2
percy201 tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 4 2 2 5 3 3 1.7 3 2
percy35 tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 4 2 2 5 3 3 1.7 3 2
percy39 tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 4 2 2 5 3 3 1.7 3 2
percy250 tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 2 2 2 5 3 3 1.7 3 2
percy40 tuberculosis 10 6 2 4 3 3 3 4 3 3 6 4 4 2 2 5 3 3 1.7   2
percy33 tuberculosis 10 6 2 4 3 3 3 4 3 2 25 4 4 2 2 5 3 5 1.7 4 2
percy20 tuberculosis 10 6 3 4 4 2 3 4 3 1 4 4 4 2 2 5 3 2 1.7 3 2
percy16b tuberculosis 10 6 2 3 3 3 3 4 3 3 24 3 4 2 1.7 5 3 3 1.7 3 2
percy234 tuberculosis 10 6 2 3 3 3 3 4 3 3 25 3 4 2 1.7 5 3 3 1.7 2 2
percy37 tuberculosis 10 6 2 5 3 3 3 4 4 3 24 3 4 2 2 5 3 3 1.7 4 2
percy249 tuberculosis 10 6   4 3 3 3 4 2 3 25 4 4 2 2 5 3 3 1.7 2 2
percy7b tuberculosis 10 6 2 4 3 3 3 4 2 3 25 3 4 2 2 5 3 3 1.7 9 2
percy41 tuberculosis 10 6 2 4 3 4 3 4 2 3 25 3 4 2 3 5 3 3 1.7 10 2
percy165 tuberculosis 10 6 2 4 3 3 3 4 2 2 10 3 4 2 2 5 3 3 1.7 3 2
percy230 tuberculosis 10 6 2 4 3 4 2 4 2 2 6 3 4 2 2 5 3 3 1.7 3 2
percy245 tuberculosis 10 6 2 2 3 2 2 4 2 2 11 3 4 2 2 5 3 3 1.7 3 2
percy220 tuberculosis 8 5 2 4 3 2 2 4 2 2 24 2 4 2 2 5 3 3 2.7 3 2
percy215 tuberculosis 10 6 2 3 3 2 3 4 2 2 5 2 4 2 2 5 3 3 2.7 3 2
percy33b tuberculosis 10 6 2 3 3 2 3 4 2 3 6 3 4 2 2 5 3 2 1.7 3 2
percy238 tuberculosis 10 6 2 3 3 2 3 4 1 2 6 3 4 2 2 1 3 4 3.1 3 2
percy217 tuberculosis 10 6 2 4 3 4 3 4 3 2 24 3 4 2 2 6 3 4 2.7 3 2
percy29b tuberculosis 10 6 2 4 3 4 3 4 3 1 25 3 4 2 2 5 3 1 2.7 3 2
percy240 tuberculosis 10 6 2 4 3 4 3 4 1 2 4 2 4 2 2 5 3 3 2.7 5 2
H37Rv tuberculosis 10 6 2 4 3.3 1 3 4 2 2 3 3 4 2 3 6 3 3 2.7 5 2
percy221 tuberculosis 10 5 2 4 3 1 4 4 2 3 8 2 4 1 1 6 1 4 1.1 2 2
percy241 tuberculosis 10 5 2 4 3 3 4 4 2 3 6 2 4 2 2 6 3 3 1.7 1 2
percy236 tuberculosis 7 5 1 4 3 6 3 4 3 3 23 2 4 1 2 6 3 2 1.7 1 2
percy244 tuberculosis 10 5 1 4 3 4 2 4 3 3 8 2 4 1 2 6 3 2 1.7 3 2
  1. Allele sizes were converted to number of repeats according to the correspondence indicated in Table 1. In some instances, decimal values are used, reflecting the existence of alleles with intermediate size. The markers are named and listed according to their position on the genome (Table 1). The strains are listed according to their position in the clustering analysis (Figure 1). M. tuberculosis CDC1551 and M. bovis AF2122/97 are included based on the predicted allele sizes (Table 1) with the exception of locus H37Rv_3690 (disagreement between observed and expected size for H37Rv at this locus).