From: Hepatitis C virus whole genome position weight matrix and robust primer design
Primer Start | Primer End | Conservation Score | Primer Start | Primer End | Conservation Score | Primer Start | Primer End | Conservation Score |
---|---|---|---|---|---|---|---|---|
30 | 54 | 1.94 | 467 | 491 | 1.938 | 3352 | 3376 | 1.822 |
31 | 55 | 1.94 | 470 | 494 | 1.938 | 3630 | 3654 | 1.808 |
55 | 79 | 1.956 | 471 | 495 | 1.939 | 3726 | 3750 | 1.684 |
63 | 87 | 1.942 | 474 | 498 | 1.938 | 5043 | 5067 | 1.876 |
77 | 101 | 1.929 | 475 | 499 | 1.931 | 5072 | 5096 | 1.835 |
116 | 140 | 1.972 | 476 | 500 | 1.926 | 5209 | 5233 | 1.818 |
117 | 141 | 1.972 | 477 | 501 | 1.923 | 5210 | 5234 | 1.792 |
129 | 153 | 1.954 | 478 | 502 | 1.891 | 5221 | 5245 | 1.763 |
164 | 188 | 1.865 | 487 | 511 | 1.918 | 5377 | 5401 | 1.754 |
165 | 189 | 1.865 | 488 | 512 | 1.918 | 5378 | 5402 | 1.732 |
166 | 190 | 1.865 | 493 | 517 | 1.89 | 5522 | 5546 | 1.745 |
187 | 211 | 1.9 | 494 | 518 | 1.89 | 5659 | 5683 | 1.695 |
188 | 212 | 1.891 | 572 | 596 | 1.805 | 5680 | 5704 | 1.882 |
191 | 215 | 1.89 | 582 | 606 | 1.873 | 5695 | 5719 | 1.866 |
197 | 221 | 1.878 | 603 | 627 | 1.811 | 6286 | 6310 | 1.782 |
201 | 225 | 1.846 | 604 | 628 | 1.77 | 6325 | 6349 | 1.815 |
209 | 233 | 1.868 | 605 | 629 | 1.77 | 6340 | 6364 | 1.79 |
235 | 259 | 1.923 | 633 | 657 | 1.897 | 6341 | 6365 | 1.746 |
236 | 260 | 1.922 | 634 | 658 | 1.864 | 6379 | 6403 | 1.648 |
237 | 261 | 1.922 | 642 | 666 | 1.743 | 6454 | 6478 | 1.783 |
238 | 262 | 1.922 | 691 | 715 | 1.542 | 6579 | 6603 | 1.838 |
241 | 265 | 1.915 | 730 | 754 | 1.484 | 7120 | 7144 | 1.868 |
242 | 266 | 1.914 | 856 | 880 | 1.58 | 7121 | 7145 | 1.868 |
243 | 267 | 1.913 | 1297 | 1321 | 1.782 | 7272 | 7296 | 1.794 |
244 | 268 | 1.912 | 1320 | 1344 | 1.893 | 7273 | 7297 | 1.754 |
245 | 269 | 1.912 | 1325 | 1349 | 1.862 | 7311 | 7335 | 1.674 |
260 | 284 | 1.953 | 1326 | 1350 | 1.834 | 7591 | 7615 | 1.856 |
261 | 285 | 1.953 | 1425 | 1449 | 1.762 | 7712 | 7736 | 1.821 |
286 | 310 | 1.924 | 1426 | 1450 | 1.729 | 7902 | 7926 | 1.813 |
287 | 311 | 1.922 | 1439 | 1463 | 1.716 | 8038 | 8062 | 1.878 |
360 | 384 | 1.936 | 1470 | 1494 | 1.67 | 8057 | 8081 | 1.912 |
387 | 411 | 1.899 | 1471 | 1495 | 1.62 | 8058 | 8082 | 1.912 |
403 | 427 | 1.914 | 1777 | 1801 | 1.532 | 8092 | 8116 | 1.864 |
407 | 431 | 1.937 | 2534 | 2558 | 1.737 | 8112 | 8136 | 1.833 |
418 | 442 | 1.894 | 2715 | 2739 | 1.928 | 8256 | 8280 | 1.833 |
428 | 452 | 1.914 | 2769 | 2793 | 1.918 | 8293 | 8317 | 1.806 |
429 | 453 | 1.914 | 2770 | 2794 | 1.907 | 8916 | 8940 | 1.839 |
430 | 454 | 1.914 | 2771 | 2795 | 1.894 | 8985 | 9009 | 1.684 |
445 | 469 | 1.908 | 3270 | 3294 | 1.759 | 9203 | 9227 | 1.742 |
452 | 476 | 1.922 | 3331 | 3355 | 1.854 | 9498 | 9522 | 1.574 |
466 | 490 | 1.936 | 3351 | 3375 | 1.84 | Â | Â | Â |