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Table 2 Selected group-specific probes

From: Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)

GROUP

DISCRIMINATING OLIGO (5'–3')

COMMON PROBE (5'–3')a cZIP code

ZIP number

actinomycetes

TTGTACACACCGCCCGTCACGT

CAIGAAAGTCGGIAACACCCGAAGGGTCAGGTTACCGCTGCGATCGCA

21

bacilli

ACTCCTACGGGAGGCAGCAGTA

GGGAATCTTCCICAATGGACGAAAGGCTGCGATCGATGGTCAGGTGCTG

3

cyanobacteria

ACGAAAGCTAGGGGAGCGAAAG

GGATTAGATACCCCTGTAGTCCTAGCCCGCAAGGTAGGTGCTGTACCCGCA

11

myxobacteria

GCGGAATTCCCIIIGTAGAGGTGAAATT

CGTAGATATIGGGAGGAACACCGGTGCTGTACCCGATCGCAAGGTGGTC

5

pseudomonads

GAGCTAATCCCAIAAAACCGATCGT

AGTCCGGATCGCAGTCTGCACGCATACCAGGTCGCATACCGGTC

15

UNIVERSAL

GCATGGITGTCGTCAGCTCGT

GTCGTGAGATGTTGGGTTAAGTCCCCGCACGATAGGTGGTCTACCGCTG

13

  1. a cZip codes are indicated in bold type.
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BMC Microbiology

ISSN: 1471-2180

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